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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4531 O_BomoMSG14079_5prime_partial:A_BomoMSG_c24640_g1_i1
117bp
4532 O_BomoMSG1407_5prime_partial:A_BomoMSG_c6614_g1_i1
131bp
4533 O_BomoMSG14080_internal:A_BomoMSG_c24640_g1_i2
127bp
 zinc_finger_protein_830_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016607 C nuclear speck
GO:0046872 F metal ion binding
GO:0051301 P cell division
4534 O_BomoMSG14081_5prime_partial:A_BomoMSG_c24640_g1_i2
117bp
4535 O_BomoMSG14082_5prime_partial:A_BomoMSG_c24641_g1_i1
627bp
 DNA_damage-binding_protein_1_[Bombyx_mori]
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0000784 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006974 P cellular response to DNA damage stimulus
GO:0016032 P viral process
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035518 P histone H2A monoubiquitination
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 P positive regulation of viral genome replication
GO:0046726 P positive regulation by virus of viral protein levels in host cell
GO:0051702 P biological process involved in interaction with symbiont
GO:0070062 C extracellular exosome
GO:0070911 P global genome nucleotide-excision repair
GO:0070914 P UV-damage excision repair
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1901990 P regulation of mitotic cell cycle phase transition
GO:1902188 P obsolete positive regulation of viral release from host cell
4536 O_BomoMSG14083_5prime_partial:A_BomoMSG_c24641_g1_i1
324bp
4537 O_BomoMSG14084_complete:A_BomoMSG_c24642_g1_i1
284bp
 bphl-like_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006520 P cellular amino acid metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
4538 O_BomoMSG14085_complete:A_BomoMSG_c24643_g1_i1
386bp
 farnesyl_diphosphate_synthase_3_isoform_X1_[Bombyx_mori]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
4539 O_BomoMSG14086_5prime_partial:A_BomoMSG_c24643_g1_i2
216bp
 farnesyl_diphosphate_synthase_3_isoform_X1_[Bombyx_mori]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
4540 O_BomoMSG14087_complete:A_BomoMSG_c24643_g1_i3
274bp
 farnesyl_diphosphate_synthase_3_isoform_X1_[Bombyx_mori]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016032 P viral process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
4541 O_BomoMSG14088_complete:A_BomoMSG_c24644_g1_i1
400bp
 lipase_1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0007586 P digestion
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
4542 O_BomoMSG14089_5prime_partial:A_BomoMSG_c24644_g1_i2
308bp
 lipase_1_[Bombyx_mori]
GO:0004806 F triglyceride lipase activity
GO:0006629 P lipid metabolic process
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
4543 O_BomoMSG1408_complete:A_BomoMSG_c6623_g1_i1
383bp
 26S_proteasome_non-ATPase_regulatory_subunit_6_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006508 P proteolysis
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0022624 C proteasome accessory complex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043488 P regulation of mRNA stability
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
4544 O_BomoMSG14090_internal:A_BomoMSG_c24645_g1_i1
236bp
 protein_cappuccino_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
4545 O_BomoMSG14091_5prime_partial:A_BomoMSG_c24645_g1_i1
114bp
4546 O_BomoMSG14092_internal:A_BomoMSG_c24645_g1_i2
268bp
 protein_cappuccino_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
4547 O_BomoMSG14093_5prime_partial:A_BomoMSG_c24645_g1_i2
114bp
4548 O_BomoMSG14094_complete:A_BomoMSG_c24648_g1_i1
178bp
 uncharacterized_protein_LOC101736452_[Bombyx_mori]
4549 O_BomoMSG14095_complete:A_BomoMSG_c24648_g1_i1
147bp
4550 O_BomoMSG14096_complete:A_BomoMSG_c24648_g1_i2
105bp
 uncharacterized_protein_LOC101736452_[Bombyx_mori]
4551 O_BomoMSG14097_complete:A_BomoMSG_c24648_g1_i4
245bp
 uncharacterized_protein_LOC101736452_[Bombyx_mori]
4552 O_BomoMSG14098_complete:A_BomoMSG_c24648_g1_i4
147bp
4553 O_BomoMSG14099_3prime_partial:A_BomoMSG_c24650_g1_i2
393bp
 uncharacterized_protein_LOC110384344_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0007275 P multicellular organism development
GO:0045665 P negative regulation of neuron differentiation
GO:0045747 P positive regulation of Notch signaling pathway
4554 O_BomoMSG1409_5prime_partial:A_BomoMSG_c6658_g1_i1
128bp
 uncharacterized_protein_LOC101742417_[Bombyx_mori]
4555 O_BomoMSG140_3prime_partial:A_BomoMSG_c524_g1_i1
119bp
 WD_repeat-containing_and_planar_cell_polarity_effector_protein_fritz_homolog_isoform_X3_[Bombyx_mori]
GO:0001736 P establishment of planar polarity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0035320 P imaginal disc-derived wing hair site selection
GO:0042995 C cell projection
4556 O_BomoMSG14100_complete:A_BomoMSG_c24651_g2_i2
166bp
 transmembrane_protein_134_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4557 O_BomoMSG14101_3prime_partial:A_BomoMSG_c24652_g1_i1
576bp
 glucose_dehydrogenase_[FAD,_quinone],_partial_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
4558 O_BomoMSG14102_complete:A_BomoMSG_c24652_g1_i2
101bp
 glucose_dehydrogenase_[FAD,_quinone],_partial_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
4559 O_BomoMSG14103_complete:A_BomoMSG_c24653_g1_i1
286bp
 lysosomal_thioesterase_PPT2_homolog_isoform_X2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0008474 F palmitoyl-(protein) hydrolase activity
GO:0016787 F hydrolase activity
GO:0016790 F thiolester hydrolase activity
GO:0098599 F palmitoyl hydrolase activity
GO:0098734 P macromolecule depalmitoylation
4560 O_BomoMSG14104_complete:A_BomoMSG_c24653_g1_i1
105bp
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