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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4441 O_BomoMSG13999_3prime_partial:A_BomoMSG_c24602_g1_i3
341bp
 intron-binding_protein_aquarius_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
4442 O_BomoMSG1399_internal:A_BomoMSG_c6519_g1_i1
112bp
4443 O_BomoMSG139_5prime_partial:A_BomoMSG_c503_g1_i1
100bp
 putative_discs_large_protein,_partial_[Operophtera_brumata]
4444 O_BomoMSG13_5prime_partial:A_BomoMSG_c107_g1_i1
170bp
 hypothetical_protein_H310_14468_[Aphanomyces_invadans]
4445 O_BomoMSG14000_3prime_partial:A_BomoMSG_c24603_g1_i1
196bp
 DNA_excision_repair_protein_ERCC-1_isoform_X2_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000109 C nucleotide-excision repair complex
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000720 P pyrimidine dimer repair by nucleotide-excision repair
GO:0000784 C chromosome, telomeric region
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001302 P obsolete replicative cell aging
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006312 P mitotic recombination
GO:0006949 P syncytium formation
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007584 P response to nutrient
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0009650 P UV protection
GO:0009744 P response to sucrose
GO:0010165 P response to X-ray
GO:0010259 P multicellular organism aging
GO:0016787 F hydrolase activity
GO:0019904 F protein domain specific binding
GO:0032205 P negative regulation of telomere maintenance
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035166 P post-embryonic hemopoiesis
GO:0035264 P multicellular organism growth
GO:0036297 P interstrand cross-link repair
GO:0043566 F DNA binding
GO:0045190 P isotype switching
GO:0048468 P cell development
GO:0048477 P oogenesis
GO:0048568 P embryonic organ development
GO:0051276 P chromosome organization
GO:0070522 C ERCC4-ERCC1 complex
GO:0070911 P global genome nucleotide-excision repair
GO:0090656 P t-circle formation
GO:1904431 P positive regulation of t-circle formation
4446 O_BomoMSG14001_internal:A_BomoMSG_c24603_g1_i2
270bp
 DNA_excision_repair_protein_ERCC-1_isoform_X1_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000109 C nucleotide-excision repair complex
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000720 P pyrimidine dimer repair by nucleotide-excision repair
GO:0000784 C chromosome, telomeric region
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001302 P obsolete replicative cell aging
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006312 P mitotic recombination
GO:0006949 P syncytium formation
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007584 P response to nutrient
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0009650 P UV protection
GO:0009744 P response to sucrose
GO:0010165 P response to X-ray
GO:0010259 P multicellular organism aging
GO:0016787 F hydrolase activity
GO:0019904 F protein domain specific binding
GO:0032205 P negative regulation of telomere maintenance
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035166 P post-embryonic hemopoiesis
GO:0035264 P multicellular organism growth
GO:0036297 P interstrand cross-link repair
GO:0043566 F DNA binding
GO:0045190 P isotype switching
GO:0048468 P cell development
GO:0048477 P oogenesis
GO:0048568 P embryonic organ development
GO:0051276 P chromosome organization
GO:0070522 C ERCC4-ERCC1 complex
GO:0070911 P global genome nucleotide-excision repair
GO:0090656 P t-circle formation
GO:1904431 P positive regulation of t-circle formation
4447 O_BomoMSG14002_3prime_partial:A_BomoMSG_c24604_g1_i2
189bp
 uncharacterized_protein_LOC101735450_isoform_X1_[Bombyx_mori]
4448 O_BomoMSG14003_internal:A_BomoMSG_c24605_g1_i1
267bp
 uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4449 O_BomoMSG14004_5prime_partial:A_BomoMSG_c24605_g1_i1
122bp
4450 O_BomoMSG14005_3prime_partial:A_BomoMSG_c24605_g1_i1
109bp
4451 O_BomoMSG14006_internal:A_BomoMSG_c24605_g1_i3
397bp
 uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4452 O_BomoMSG14007_5prime_partial:A_BomoMSG_c24605_g1_i3
122bp
4453 O_BomoMSG14008_3prime_partial:A_BomoMSG_c24605_g1_i3
109bp
4454 O_BomoMSG14009_internal:A_BomoMSG_c24605_g1_i4
659bp
 uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4455 O_BomoMSG1400_3prime_partial:A_BomoMSG_c6531_g1_i1
273bp
 eIF-2-alpha_kinase_GCN2_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004694 F eukaryotic translation initiation factor 2alpha kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007399 P nervous system development
GO:0007612 P learning
GO:0007616 P long-term memory
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019081 P viral translation
GO:0030154 P cell differentiation
GO:0032792 P negative regulation of CREB transcription factor activity
GO:0034198 P cellular response to amino acid starvation
GO:0036492 P eiF2alpha phosphorylation in response to endoplasmic reticulum stress
GO:0044828 P negative regulation by host of viral genome replication
GO:0045947 P negative regulation of translational initiation
GO:0060733 P GCN2-mediated signaling
GO:0070417 P cellular response to cold
GO:0071264 P positive regulation of translational initiation in response to starvation
GO:1900273 P positive regulation of long-term synaptic potentiation
4456 O_BomoMSG14010_5prime_partial:A_BomoMSG_c24605_g1_i4
122bp
4457 O_BomoMSG14011_3prime_partial:A_BomoMSG_c24605_g1_i4
109bp
4458 O_BomoMSG14012_internal:A_BomoMSG_c24605_g1_i5
242bp
 uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4459 O_BomoMSG14013_5prime_partial:A_BomoMSG_c24605_g1_i5
122bp
4460 O_BomoMSG14014_3prime_partial:A_BomoMSG_c24605_g1_i5
109bp
4461 O_BomoMSG14015_5prime_partial:A_BomoMSG_c24607_g1_i1
242bp
 ephrin_type-B_receptor_1-B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005003 F ephrin receptor activity
GO:0005004 F GPI-linked ephrin receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0008046 F axon guidance receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0022407 P regulation of cell-cell adhesion
GO:0030425 C dendrite
GO:0031290 P retinal ganglion cell axon guidance
GO:0031594 C neuromuscular junction
GO:0031952 P regulation of protein autophosphorylation
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043281 P regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045211 C postsynaptic membrane
GO:0045499 F chemorepellent activity
GO:0046875 F ephrin receptor binding
GO:0048013 P ephrin receptor signaling pathway
GO:0048671 P negative regulation of collateral sprouting
GO:0048755 P branching morphogenesis of a nerve
GO:0050730 P regulation of peptidyl-tyrosine phosphorylation
GO:0050919 P negative chemotaxis
GO:0051964 P negative regulation of synapse assembly
GO:0070372 P regulation of ERK1 and ERK2 cascade
GO:0072178 P nephric duct morphogenesis
4462 O_BomoMSG14016_5prime_partial:A_BomoMSG_c24607_g1_i2
148bp
 ephrin_type-B_receptor_1-B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005003 F ephrin receptor activity
GO:0005005 F transmembrane-ephrin receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0021963 P spinothalamic tract morphogenesis
GO:0030424 C axon
GO:0030425 C dendrite
GO:0042995 C cell projection
GO:0048013 P ephrin receptor signaling pathway
GO:0051965 P positive regulation of synapse assembly
GO:0060996 P dendritic spine development
GO:0060997 P dendritic spine morphogenesis
4463 O_BomoMSG14017_internal:A_BomoMSG_c24607_g2_i1
149bp
 ephrin_type-B_receptor_1-B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005003 F ephrin receptor activity
GO:0005004 F GPI-linked ephrin receptor activity
GO:0005005 F transmembrane-ephrin receptor activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0007155 P cell adhesion
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0031901 C early endosome membrane
GO:0043087 P regulation of GTPase activity
GO:0048013 P ephrin receptor signaling pathway
4464 O_BomoMSG14018_5prime_partial:A_BomoMSG_c24608_g1_i1
342bp
 very_low-density_lipoprotein_receptor_isoform_2_precursor_[Bombyx_mori]
4465 O_BomoMSG14019_complete:A_BomoMSG_c24609_g1_i3
186bp
 THAP_domain-containing_protein_1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
4466 O_BomoMSG1401_internal:A_BomoMSG_c6585_g1_i1
143bp
 hypothetical_protein_RR48_02308_[Papilio_machaon]
4467 O_BomoMSG14020_complete:A_BomoMSG_c24609_g1_i3
118bp
4468 O_BomoMSG14021_complete:A_BomoMSG_c24610_g1_i1
630bp
 ATP-binding_cassette_sub-family_G_member_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009720 P detection of hormone stimulus
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0010888 P negative regulation of lipid storage
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055037 C recycling endosome
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
4469 O_BomoMSG14022_internal:A_BomoMSG_c24611_g1_i1
422bp
 tetratricopeptide_repeat_protein_17_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0030041 P actin filament polymerization
GO:0044782 P cilium organization
4470 O_BomoMSG14023_complete:A_BomoMSG_c24612_g1_i1
163bp
 queuine_tRNA-ribosyltransferase_catalytic_subunit_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0046872 F metal ion binding
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