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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4411 O_BomoMSG13971_complete:A_BomoMSG_c24590_g1_i1
106bp
4412 O_BomoMSG13972_complete:A_BomoMSG_c24590_g1_i2
287bp
 protein_AF-9_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
4413 O_BomoMSG13973_complete:A_BomoMSG_c24590_g1_i2
106bp
4414 O_BomoMSG13974_complete:A_BomoMSG_c24591_g1_i1
517bp
 uncharacterized_protein_LOC101739168_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0060348 P bone development
4415 O_BomoMSG13975_complete:A_BomoMSG_c24591_g1_i1
143bp
4416 O_BomoMSG13976_5prime_partial:A_BomoMSG_c24591_g1_i2
316bp
 uncharacterized_protein_LOC101739168_[Bombyx_mori]
4417 O_BomoMSG13977_complete:A_BomoMSG_c24591_g1_i2
143bp
4418 O_BomoMSG13978_5prime_partial:A_BomoMSG_c24592_g1_i1
199bp
 vinculin-like_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0048812 P neuron projection morphogenesis
GO:0051015 F actin filament binding
4419 O_BomoMSG13979_3prime_partial:A_BomoMSG_c24592_g1_i1
137bp
4420 O_BomoMSG1397_5prime_partial:A_BomoMSG_c6497_g1_i1
130bp
4421 O_BomoMSG13980_5prime_partial:A_BomoMSG_c24595_g1_i1
182bp
 uncharacterized_protein_LOC101744638_[Bombyx_mori]
4422 O_BomoMSG13981_3prime_partial:A_BomoMSG_c24596_g1_i1
541bp
 uncharacterized_protein_LOC101744402_[Bombyx_mori]
GO:0016567 P protein ubiquitination
4423 O_BomoMSG13982_internal:A_BomoMSG_c24596_g1_i2
402bp
 uncharacterized_protein_LOC101744402_[Bombyx_mori]
4424 O_BomoMSG13983_complete:A_BomoMSG_c24597_g1_i1
251bp
 exosome_complex_component_RRP41_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0030307 P positive regulation of cell growth
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
4425 O_BomoMSG13984_5prime_partial:A_BomoMSG_c24599_g1_i1
122bp
4426 O_BomoMSG13985_5prime_partial:A_BomoMSG_c24600_g1_i1
157bp
4427 O_BomoMSG13986_3prime_partial:A_BomoMSG_c24600_g1_i2
760bp
 PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4428 O_BomoMSG13987_complete:A_BomoMSG_c24600_g1_i2
278bp
 PREDICTED:_uncharacterized_protein_LOC105389351_[Plutella_xylostella]
4429 O_BomoMSG13988_5prime_partial:A_BomoMSG_c24600_g2_i1
339bp
 uncharacterized_protein_LOC110383640_[Helicoverpa_armigera]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0020002 C host cell plasma membrane
GO:0033644 C host cell membrane
GO:0039660 F structural constituent of virion
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4430 O_BomoMSG13989_internal:A_BomoMSG_c24600_g1_i3
221bp
 uncharacterized_protein_LOC101740309_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4431 O_BomoMSG1398_internal:A_BomoMSG_c6519_g1_i1
112bp
 importin-11,_partial_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042991 P obsolete transcription factor import into nucleus
4432 O_BomoMSG13990_5prime_partial:A_BomoMSG_c24600_g1_i4
230bp
 PREDICTED:_uncharacterized_protein_LOC105389351_[Plutella_xylostella]
4433 O_BomoMSG13991_3prime_partial:A_BomoMSG_c24600_g1_i4
132bp
 PREDICTED:_uncharacterized_protein_LOC106132592,_partial_[Amyelois_transitella]
4434 O_BomoMSG13992_complete:A_BomoMSG_c24600_g1_i5
278bp
 PREDICTED:_uncharacterized_protein_LOC105389351_[Plutella_xylostella]
4435 O_BomoMSG13993_3prime_partial:A_BomoMSG_c24600_g1_i5
177bp
 PREDICTED:_uncharacterized_protein_LOC106132592,_partial_[Amyelois_transitella]
4436 O_BomoMSG13994_5prime_partial:A_BomoMSG_c24600_g1_i5
131bp
4437 O_BomoMSG13995_3prime_partial:A_BomoMSG_c24600_g1_i6
760bp
 PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4438 O_BomoMSG13996_complete:A_BomoMSG_c24600_g1_i6
278bp
 PREDICTED:_uncharacterized_protein_LOC105389351_[Plutella_xylostella]
4439 O_BomoMSG13997_5prime_partial:A_BomoMSG_c24600_g1_i6
131bp
4440 O_BomoMSG13998_5prime_partial:A_BomoMSG_c24601_g1_i1
789bp
 SNF4/AMP-activated_protein_kinase_gamma_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004679 F AMP-activated protein kinase activity
GO:0004862 F cAMP-dependent protein kinase inhibitor activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0005977 P glycogen metabolic process
GO:0006110 P regulation of glycolytic process
GO:0006468 P protein phosphorylation
GO:0006469 P negative regulation of protein kinase activity
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0007005 P mitochondrion organization
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0008607 F phosphorylase kinase regulator activity
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0016208 F AMP binding
GO:0019217 P regulation of fatty acid metabolic process
GO:0019901 F protein kinase binding
GO:0030295 F protein kinase activator activity
GO:0031588 C nucleotide-activated protein kinase complex
GO:0032147 P activation of protein kinase activity
GO:0035556 P intracellular signal transduction
GO:0043531 F ADP binding
GO:0045860 P positive regulation of protein kinase activity
GO:0050790 P regulation of catalytic activity
GO:0061024 P membrane organization
GO:0071901 P negative regulation of protein serine/threonine kinase activity
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