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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4381 O_BomoMSG13944_complete:A_BomoMSG_c24572_g1_i1
105bp
4382 O_BomoMSG13945_internal:A_BomoMSG_c24573_g1_i1
158bp
 PREDICTED:_zinc_finger_protein_Xfin-like_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4383 O_BomoMSG13946_5prime_partial:A_BomoMSG_c24573_g1_i1
106bp
4384 O_BomoMSG13947_internal:A_BomoMSG_c24573_g1_i2
184bp
 PREDICTED:_zinc_finger_protein_Xfin-like_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4385 O_BomoMSG13948_5prime_partial:A_BomoMSG_c24573_g1_i2
106bp
4386 O_BomoMSG13949_internal:A_BomoMSG_c24573_g1_i3
477bp
 hypothetical_protein_RR46_06039_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4387 O_BomoMSG1394_internal:A_BomoMSG_c6446_g1_i1
109bp
 DNA_polymerase_zeta_catalytic_subunit_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016035 C zeta DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4388 O_BomoMSG13950_5prime_partial:A_BomoMSG_c24573_g1_i3
106bp
4389 O_BomoMSG13951_5prime_partial:A_BomoMSG_c24575_g1_i1
140bp
 p53_and_DNA_damage-regulated_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0008150 P biological_process
GO:0016272 C prefoldin complex
GO:0051082 F unfolded protein binding
4390 O_BomoMSG13952_complete:A_BomoMSG_c24576_g2_i1
195bp
 heat_shock_protein_67B2_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004792 F thiosulfate sulfurtransferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
4391 O_BomoMSG13953_5prime_partial:A_BomoMSG_c24576_g2_i2
156bp
 heat_shock_protein_67B2_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004792 F thiosulfate sulfurtransferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
4392 O_BomoMSG13954_5prime_partial:A_BomoMSG_c24578_g1_i2
147bp
 hypothetical_protein_[Escherichia_coli]
4393 O_BomoMSG13955_internal:A_BomoMSG_c24579_g2_i1
229bp
 tigger_transposable_element-derived_protein_4_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
4394 O_BomoMSG13956_internal:A_BomoMSG_c24579_g2_i2
164bp
 PREDICTED:_tigger_transposable_element-derived_protein_4-like_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
4395 O_BomoMSG13957_5prime_partial:A_BomoMSG_c24581_g1_i1
204bp
 negative_elongation_factor_E_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0008023 C transcription elongation factor complex
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0032021 C NELF complex
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
4396 O_BomoMSG13958_complete:A_BomoMSG_c24581_g1_i2
265bp
 negative_elongation_factor_E_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0008023 C transcription elongation factor complex
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0032021 C NELF complex
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
4397 O_BomoMSG13959_5prime_partial:A_BomoMSG_c24584_g1_i1
372bp
 DDB1-_and_CUL4-associated_factor_12_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
4398 O_BomoMSG1395_internal:A_BomoMSG_c6478_g1_i1
110bp
 GRIP_and_coiled-coil_domain-containing_protein_2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007099 P centriole replication
GO:0019904 F protein domain specific binding
GO:0051299 P centrosome separation
GO:0051301 P cell division
GO:1902410 P mitotic cytokinetic process
4399 O_BomoMSG13960_5prime_partial:A_BomoMSG_c24584_g1_i2
441bp
 DDB1-_and_CUL4-associated_factor_12_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
4400 O_BomoMSG13961_complete:A_BomoMSG_c24584_g1_i3
447bp
 DDB1-_and_CUL4-associated_factor_12_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
4401 O_BomoMSG13962_complete:A_BomoMSG_c24585_g1_i1
768bp
 protein_zer-1_homolog_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0016567 P protein ubiquitination
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0051438 P regulation of ubiquitin-protein transferase activity
4402 O_BomoMSG13963_complete:A_BomoMSG_c24585_g1_i1
129bp
4403 O_BomoMSG13964_complete:A_BomoMSG_c24585_g1_i1
126bp
4404 O_BomoMSG13965_5prime_partial:A_BomoMSG_c24587_g1_i1
174bp
 striatin-3_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000159 C protein phosphatase type 2A complex
GO:0003700 F DNA-binding transcription factor activity
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0032403 F protein-containing complex binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051721 F protein phosphatase 2A binding
GO:0070016 F armadillo repeat domain binding
4405 O_BomoMSG13966_complete:A_BomoMSG_c24587_g1_i1
120bp
4406 O_BomoMSG13967_complete:A_BomoMSG_c24588_g1_i1
199bp
 protein_lin-7_homolog_C_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0014069 C postsynaptic density
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016323 C basolateral plasma membrane
GO:0019904 F protein domain specific binding
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0043005 C neuron projection
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0098793 C presynapse
GO:1903361 P protein localization to basolateral plasma membrane
4407 O_BomoMSG13968_5prime_partial:A_BomoMSG_c24589_g1_i1
603bp
 sphingosine_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0003376 P sphingosine-1-phosphate receptor signaling pathway
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0006669 P sphinganine-1-phosphate biosynthetic process
GO:0006670 P sphingosine metabolic process
GO:0007420 P brain development
GO:0007565 P female pregnancy
GO:0008283 P cell population proliferation
GO:0008284 P positive regulation of cell population proliferation
GO:0008481 F sphinganine kinase activity
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0017050 F D-erythro-sphingosine kinase activity
GO:0038036 F sphingosine-1-phosphate receptor activity
GO:0043066 P negative regulation of apoptotic process
GO:0046512 P sphingosine biosynthetic process
GO:0046834 P lipid phosphorylation
4408 O_BomoMSG13969_complete:A_BomoMSG_c24589_g1_i1
127bp
4409 O_BomoMSG1396_internal:A_BomoMSG_c6497_g1_i1
209bp
 LOW_QUALITY_PROTEIN:_ras-responsive_element-binding_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001779 P natural killer cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005721 C pericentric heterochromatin
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0008187 F poly-pyrimidine tract binding
GO:0010628 P positive regulation of gene expression
GO:0016568 P chromatin organization
GO:0030097 P hemopoiesis
GO:0030098 P lymphocyte differentiation
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030900 P forebrain development
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0032993 C protein-DNA complex
GO:0035881 P amacrine cell differentiation
GO:0040018 P positive regulation of multicellular organism growth
GO:0043234 C protein-containing complex
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045184 P establishment of protein localization
GO:0045579 P positive regulation of B cell differentiation
GO:0045660 P positive regulation of neutrophil differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048535 P lymph node development
GO:0048538 P thymus development
GO:0048541 P Peyer's patch development
GO:0048732 P gland development
GO:0051138 P positive regulation of NK T cell differentiation
GO:0060040 P retinal bipolar neuron differentiation
GO:0060041 P retina development in camera-type eye
4410 O_BomoMSG13970_complete:A_BomoMSG_c24590_g1_i1
287bp
 protein_AF-9_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
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