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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4261 O_BomoMSG13836_complete:A_BomoMSG_c24528_g1_i1
111bp
4262 O_BomoMSG13837_internal:A_BomoMSG_c24531_g1_i1
140bp
 hypothetical_protein_BOV89_12685,_partial_[Solemya_velum_gill_symbiont]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4263 O_BomoMSG13838_internal:A_BomoMSG_c24532_g1_i1
385bp
 histone_acetyltransferase_KAT7,_partial_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0043966 P histone H3 acetylation
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0046872 F metal ion binding
GO:1900182 P positive regulation of protein localization to nucleus
4264 O_BomoMSG13839_5prime_partial:A_BomoMSG_c24532_g1_i2
236bp
 histone_acetyltransferase_KAT7,_partial_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0043966 P histone H3 acetylation
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0046872 F metal ion binding
GO:1900182 P positive regulation of protein localization to nucleus
4265 O_BomoMSG1383_5prime_partial:A_BomoMSG_c6379_g1_i1
100bp
 prostaglandin_E2_receptor_EP1_subtype_[Helicoverpa_armigera]
4266 O_BomoMSG13840_5prime_partial:A_BomoMSG_c24532_g1_i2
162bp
 hypothetical_protein_AYI69_g1284_[Smittium_culicis]
4267 O_BomoMSG13841_5prime_partial:A_BomoMSG_c24533_g1_i1
386bp
 mitogen-activated_protein_kinase_kinase_kinase_kinase_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000185 P obsolete activation of MAPKKK activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007257 P obsolete activation of JUN kinase activity
GO:0008349 F MAP kinase kinase kinase kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
4268 O_BomoMSG13842_5prime_partial:A_BomoMSG_c24534_g1_i1
120bp
4269 O_BomoMSG13843_5prime_partial:A_BomoMSG_c24534_g1_i2
120bp
4270 O_BomoMSG13844_5prime_partial:A_BomoMSG_c24534_g1_i3
120bp
4271 O_BomoMSG13845_complete:A_BomoMSG_c24535_g1_i1
161bp
 golgin_subfamily_A_member_7_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002178 C palmitoyltransferase complex
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0016020 C membrane
GO:0018230 P peptidyl-L-cysteine S-palmitoylation
GO:0031228 C intrinsic component of Golgi membrane
GO:0043001 P Golgi to plasma membrane protein transport
GO:0050821 P protein stabilization
GO:0070062 C extracellular exosome
4272 O_BomoMSG13846_3prime_partial:A_BomoMSG_c24536_g1_i1
418bp
 WD_repeat-containing_protein_37_[Bombyx_mori]
4273 O_BomoMSG13847_5prime_partial:A_BomoMSG_c24538_g1_i1
410bp
 hepatocyte_nuclear_factor_4_isoform_a_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006629 P lipid metabolic process
GO:0007492 P endoderm development
GO:0007498 P mesoderm development
GO:0008270 F zinc ion binding
GO:0008610 P lipid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0016042 P lipid catabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0034440 P lipid oxidation
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
4274 O_BomoMSG13848_complete:A_BomoMSG_c24538_g1_i1
159bp
 PREDICTED:_hepatocyte_nuclear_factor_4-beta-like_isoform_X3_[Monodelphis_domestica]
4275 O_BomoMSG13849_complete:A_BomoMSG_c24538_g1_i1
111bp
4276 O_BomoMSG1384_internal:A_BomoMSG_c6384_g1_i1
167bp
 PREDICTED:_uncharacterized_protein_LOC106123780_[Papilio_xuthus]
4277 O_BomoMSG13850_5prime_partial:A_BomoMSG_c24538_g1_i2
360bp
 hepatocyte_nuclear_factor_4_isoform_a_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006629 P lipid metabolic process
GO:0007492 P endoderm development
GO:0007498 P mesoderm development
GO:0008270 F zinc ion binding
GO:0008610 P lipid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0016042 P lipid catabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0034440 P lipid oxidation
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
4278 O_BomoMSG13851_complete:A_BomoMSG_c24538_g1_i2
159bp
 PREDICTED:_hepatocyte_nuclear_factor_4-beta-like_isoform_X3_[Monodelphis_domestica]
4279 O_BomoMSG13852_complete:A_BomoMSG_c24538_g1_i2
111bp
4280 O_BomoMSG13853_complete:A_BomoMSG_c24538_g1_i3
411bp
 hepatocyte_nuclear_factor_4_isoform_b_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006629 P lipid metabolic process
GO:0007492 P endoderm development
GO:0007498 P mesoderm development
GO:0008270 F zinc ion binding
GO:0008610 P lipid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0016042 P lipid catabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0034440 P lipid oxidation
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
4281 O_BomoMSG13854_complete:A_BomoMSG_c24538_g1_i3
159bp
 PREDICTED:_hepatocyte_nuclear_factor_4-beta-like_isoform_X3_[Monodelphis_domestica]
4282 O_BomoMSG13855_complete:A_BomoMSG_c24538_g1_i3
111bp
4283 O_BomoMSG13856_complete:A_BomoMSG_c24541_g1_i1
138bp
 M-phase_phosphoprotein_6_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
4284 O_BomoMSG13857_complete:A_BomoMSG_c24541_g1_i2
138bp
 M-phase_phosphoprotein_6_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
4285 O_BomoMSG13858_complete:A_BomoMSG_c24542_g1_i1
263bp
 palmitoyltransferase_ZDHHC5_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0007626 P locomotory behavior
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
4286 O_BomoMSG13859_5prime_partial:A_BomoMSG_c24542_g1_i2
312bp
 palmitoyltransferase_ZDHHC5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
4287 O_BomoMSG1385_complete:A_BomoMSG_c6393_g1_i1
439bp
 LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4288 O_BomoMSG13860_3prime_partial:A_BomoMSG_c24543_g1_i1
196bp
 serine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004828 F serine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006434 P seryl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0044822 F RNA binding
GO:0097056 P selenocysteinyl-tRNA(Sec) biosynthetic process
4289 O_BomoMSG13861_internal:A_BomoMSG_c24543_g1_i2
302bp
 serine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004828 F serine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006434 P seryl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0044822 F RNA binding
GO:0097056 P selenocysteinyl-tRNA(Sec) biosynthetic process
4290 O_BomoMSG13862_complete:A_BomoMSG_c24545_g1_i1
799bp
 ribonucleoside-diphosphate_reductase_large_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004748 F ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005524 F ATP binding
GO:0005971 C ribonucleoside-diphosphate reductase complex
GO:0006260 P DNA replication
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0008152 P metabolic process
GO:0009263 P deoxyribonucleotide biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0042246 P tissue regeneration
GO:0055114 P obsolete oxidation-reduction process
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