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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3901 O_BomoMSG13511_internal:A_BomoMSG_c24381_g1_i3
408bp
 tyrosine-protein_phosphatase_non-receptor_type_23_[Bombyx_mori]
3902 O_BomoMSG13512_5prime_partial:A_BomoMSG_c24381_g1_i3
191bp
3903 O_BomoMSG13513_internal:A_BomoMSG_c24381_g1_i4
540bp
 tyrosine-protein_phosphatase_non-receptor_type_23_[Bombyx_mori]
3904 O_BomoMSG13514_5prime_partial:A_BomoMSG_c24381_g1_i4
191bp
3905 O_BomoMSG13515_complete:A_BomoMSG_c24381_g1_i4
137bp
3906 O_BomoMSG13516_complete:A_BomoMSG_c24383_g1_i1
156bp
 vitamin_K_epoxide_reductase_complex_subunit_1-like_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0017187 P peptidyl-glutamic acid carboxylation
GO:0034599 P cellular response to oxidative stress
GO:0042373 P vitamin K metabolic process
GO:0047057 F vitamin-K-epoxide reductase (warfarin-sensitive) activity
GO:0048038 F quinone binding
GO:0055114 P obsolete oxidation-reduction process
3907 O_BomoMSG13517_complete:A_BomoMSG_c24383_g1_i2
156bp
 vitamin_K_epoxide_reductase_complex_subunit_1-like_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0017187 P peptidyl-glutamic acid carboxylation
GO:0034599 P cellular response to oxidative stress
GO:0042373 P vitamin K metabolic process
GO:0047057 F vitamin-K-epoxide reductase (warfarin-sensitive) activity
GO:0048038 F quinone binding
GO:0055114 P obsolete oxidation-reduction process
3908 O_BomoMSG13518_3prime_partial:A_BomoMSG_c24384_g1_i1
317bp
 sid-1-related_gene1_precursor_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003725 F double-stranded RNA binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
3909 O_BomoMSG13519_5prime_partial:A_BomoMSG_c24384_g1_i1
105bp
3910 O_BomoMSG1351_internal:A_BomoMSG_c6180_g1_i1
99bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
3911 O_BomoMSG13520_complete:A_BomoMSG_c24385_g1_i1
320bp
 mitochondrial_folate_transporter/carrier_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
3912 O_BomoMSG13521_5prime_partial:A_BomoMSG_c24385_g1_i1
116bp
3913 O_BomoMSG13522_complete:A_BomoMSG_c24385_g1_i2
309bp
 hypothetical_protein_KGM_201532_[Danaus_plexippus_plexippus]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006544 P glycine metabolic process
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0008517 F folic acid transmembrane transporter activity
GO:0015884 P folic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0046655 P folic acid metabolic process
GO:1904947 P folate import into mitochondrion
3914 O_BomoMSG13523_internal:A_BomoMSG_c24386_g1_i1
576bp
 histone_acetyltransferase_KAT6A_isoform_X2_[Bombyx_mori]
3915 O_BomoMSG13524_5prime_partial:A_BomoMSG_c24386_g1_i1
458bp
3916 O_BomoMSG13525_complete:A_BomoMSG_c24386_g1_i1
135bp
3917 O_BomoMSG13526_3prime_partial:A_BomoMSG_c24388_g1_i1
192bp
 homeotic_protein_female_sterile_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
3918 O_BomoMSG13527_internal:A_BomoMSG_c24390_g1_i1
110bp
 ribosomal_protein_S11_isoform_2_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006412 P translation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
3919 O_BomoMSG13528_5prime_partial:A_BomoMSG_c24390_g2_i1
161bp
 ribosomal_protein_S11_isoform_2_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006412 P translation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
3920 O_BomoMSG13529_internal:A_BomoMSG_c24391_g1_i1
508bp
 myosin-IB_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0005938 C cell cortex
GO:0007368 P determination of left/right symmetry
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032528 P microvillus organization
GO:0042623 F ATP hydrolysis activity
GO:0042742 P defense response to bacterium
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0071907 P determination of digestive tract left/right asymmetry
3921 O_BomoMSG1352_internal:A_BomoMSG_c6181_g1_i1
174bp
 uncharacterized_protein_LOC101740753,_partial_[Bombyx_mori]
3922 O_BomoMSG13530_5prime_partial:A_BomoMSG_c24391_g1_i1
448bp
3923 O_BomoMSG13531_5prime_partial:A_BomoMSG_c24392_g1_i1
200bp
 UPF0465_protein_C5orf33_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003951 F NAD+ kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006741 P NADP biosynthetic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019674 P NAD metabolic process
GO:0042803 F protein homodimerization activity
3924 O_BomoMSG13532_5prime_partial:A_BomoMSG_c24392_g1_i2
226bp
 NAD_kinase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003951 F NAD+ kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006741 P NADP biosynthetic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019674 P NAD metabolic process
GO:0042803 F protein homodimerization activity
3925 O_BomoMSG13533_complete:A_BomoMSG_c24392_g1_i2
100bp
3926 O_BomoMSG13534_complete:A_BomoMSG_c24392_g1_i3
440bp
 NAD_kinase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003951 F NAD+ kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006741 P NADP biosynthetic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019674 P NAD metabolic process
GO:0042803 F protein homodimerization activity
3927 O_BomoMSG13535_complete:A_BomoMSG_c24392_g1_i3
129bp
3928 O_BomoMSG13536_complete:A_BomoMSG_c24392_g1_i3
100bp
3929 O_BomoMSG13537_internal:A_BomoMSG_c24394_g1_i1
535bp
 LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008270 F zinc ion binding
GO:0016458 P obsolete gene silencing
GO:0031936 P obsolete negative regulation of chromatin silencing
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
GO:0070604 C RSC-type complex
3930 O_BomoMSG13538_internal:A_BomoMSG_c24394_g1_i2
358bp
 LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008270 F zinc ion binding
GO:0016458 P obsolete gene silencing
GO:0031936 P obsolete negative regulation of chromatin silencing
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
GO:0070604 C RSC-type complex
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