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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3841 O_BomoMSG13458_complete:A_BomoMSG_c24357_g1_i1
115bp
3842 O_BomoMSG13459_internal:A_BomoMSG_c24359_g1_i1
364bp
 CCR4-NOT_transcription_complex_subunit_3_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
3843 O_BomoMSG1345_internal:A_BomoMSG_c6161_g1_i1
152bp
 ceramide_glucosyltransferase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006679 P glucosylceramide biosynthetic process
GO:0006687 P glycosphingolipid metabolic process
GO:0006688 P glycosphingolipid biosynthetic process
GO:0008120 F ceramide glucosyltransferase activity
GO:0008544 P epidermis development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:1903955 P positive regulation of protein targeting to mitochondrion
3844 O_BomoMSG13460_5prime_partial:A_BomoMSG_c24359_g1_i1
109bp
3845 O_BomoMSG13461_internal:A_BomoMSG_c24359_g1_i2
344bp
 CCR4-NOT_transcription_complex_subunit_3_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
3846 O_BomoMSG13462_5prime_partial:A_BomoMSG_c24359_g1_i2
109bp
3847 O_BomoMSG13463_3prime_partial:A_BomoMSG_c24359_g1_i3
382bp
 CCR4-NOT_transcription_complex_subunit_3_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
3848 O_BomoMSG13464_5prime_partial:A_BomoMSG_c24359_g1_i3
109bp
3849 O_BomoMSG13465_5prime_partial:A_BomoMSG_c24359_g1_i4
109bp
3850 O_BomoMSG13466_complete:A_BomoMSG_c24360_g1_i2
724bp
 PREDICTED:_FACT_complex_subunit_Ssrp1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
3851 O_BomoMSG13467_complete:A_BomoMSG_c24360_g1_i2
158bp
3852 O_BomoMSG13468_complete:A_BomoMSG_c24361_g5_i1
100bp
 protein_mini_spindles_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
3853 O_BomoMSG13469_5prime_partial:A_BomoMSG_c24361_g5_i4
201bp
 rotamase_Pin1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0001934 P positive regulation of protein phosphorylation
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0003774 F cytoskeletal motor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0008013 F beta-catenin binding
GO:0016607 C nuclear speck
GO:0016853 F isomerase activity
GO:0030182 P neuron differentiation
GO:0030496 C midbody
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031434 F mitogen-activated protein kinase kinase binding
GO:0032091 P negative regulation of protein binding
GO:0032465 P regulation of cytokinesis
GO:0032480 P negative regulation of type I interferon production
GO:0032794 F GTPase activating protein binding
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042177 P negative regulation of protein catabolic process
GO:0043005 C neuron projection
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050808 P synapse organization
GO:0050815 F phosphoserine residue binding
GO:0050816 F phosphothreonine residue binding
GO:0050821 P protein stabilization
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0060393 P regulation of pathway-restricted SMAD protein phosphorylation
GO:0061051 P positive regulation of cell growth involved in cardiac muscle cell development
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1900180 P regulation of protein localization to nucleus
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:2000146 P negative regulation of cell motility
3854 O_BomoMSG1346_3prime_partial:A_BomoMSG_c6166_g1_i2
185bp
 bromodomain_adjacent_to_zinc_finger_domain_protein_1A_[Bombyx_mori]
3855 O_BomoMSG13470_complete:A_BomoMSG_c24361_g5_i7
100bp
 protein_mini_spindles_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
3856 O_BomoMSG13471_complete:A_BomoMSG_c24362_g2_i1
365bp
 fructose_1,6-bisphosphate_aldolase_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004332 F fructose-bisphosphate aldolase activity
GO:0005829 C cytosol
GO:0006096 P glycolytic process
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007498 P mesoderm development
GO:0016829 F lyase activity
GO:0030018 C Z disc
GO:0031430 C M band
3857 O_BomoMSG13472_complete:A_BomoMSG_c24362_g2_i2
365bp
 fructose_1,6-bisphosphate_aldolase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004332 F fructose-bisphosphate aldolase activity
GO:0005829 C cytosol
GO:0006096 P glycolytic process
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007498 P mesoderm development
GO:0016829 F lyase activity
GO:0030018 C Z disc
GO:0031430 C M band
3858 O_BomoMSG13473_3prime_partial:A_BomoMSG_c24366_g1_i1
703bp
 protein_crooked_neck_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007405 P neuroblast proliferation
GO:0007417 P central nervous system development
GO:0007422 P peripheral nervous system development
GO:0007438 P oenocyte development
GO:0007443 P Malpighian tubule morphogenesis
GO:0008347 P glial cell migration
GO:0008366 P axon ensheathment
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0044822 F RNA binding
GO:0048663 P neuron fate commitment
GO:0051298 P centrosome duplication
GO:0071010 C prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
GO:0072686 C mitotic spindle
3859 O_BomoMSG13474_internal:A_BomoMSG_c24366_g1_i2
166bp
 protein_crooked_neck_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007405 P neuroblast proliferation
GO:0007417 P central nervous system development
GO:0007422 P peripheral nervous system development
GO:0007438 P oenocyte development
GO:0007443 P Malpighian tubule morphogenesis
GO:0008347 P glial cell migration
GO:0008366 P axon ensheathment
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0044822 F RNA binding
GO:0048663 P neuron fate commitment
GO:0051298 P centrosome duplication
GO:0071010 C prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
GO:0072686 C mitotic spindle
3860 O_BomoMSG13475_5prime_partial:A_BomoMSG_c24367_g2_i1
149bp
 PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_[Papilio_xuthus]
3861 O_BomoMSG13476_5prime_partial:A_BomoMSG_c24367_g2_i1
133bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110386319,_partial_[Bombyx_mori]
3862 O_BomoMSG13477_5prime_partial:A_BomoMSG_c24367_g2_i1
117bp
 hikaru_genki_[Bombyx_mori]
3863 O_BomoMSG13478_3prime_partial:A_BomoMSG_c24367_g2_i2
108bp
 reverse_transcriptase,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3864 O_BomoMSG13479_internal:A_BomoMSG_c24367_g2_i3
146bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110386319,_partial_[Bombyx_mori]
3865 O_BomoMSG1347_3prime_partial:A_BomoMSG_c6168_g1_i1
319bp
 erlin-2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032933 P SREBP signaling pathway
3866 O_BomoMSG13480_5prime_partial:A_BomoMSG_c24367_g2_i4
149bp
 PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_[Papilio_xuthus]
3867 O_BomoMSG13481_5prime_partial:A_BomoMSG_c24367_g2_i4
117bp
 hikaru_genki_[Bombyx_mori]
3868 O_BomoMSG13482_5prime_partial:A_BomoMSG_c24368_g1_i1
295bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
3869 O_BomoMSG13483_complete:A_BomoMSG_c24368_g1_i2
186bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
3870 O_BomoMSG13484_complete:A_BomoMSG_c24368_g1_i3
356bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
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