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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3781 O_BomoMSG13403_internal:A_BomoMSG_c24325_g1_i1
306bp
 zinc_finger_protein_62_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3782 O_BomoMSG13404_3prime_partial:A_BomoMSG_c24325_g1_i2
225bp
 zinc_finger_protein_62_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3783 O_BomoMSG13405_complete:A_BomoMSG_c24327_g1_i1
411bp
 leucine-rich_repeat_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0016567 P protein ubiquitination
3784 O_BomoMSG13406_5prime_partial:A_BomoMSG_c24327_g1_i2
277bp
 leucine-rich_repeat_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0016567 P protein ubiquitination
3785 O_BomoMSG13407_5prime_partial:A_BomoMSG_c24327_g1_i3
233bp
 leucine-rich_repeat_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0016567 P protein ubiquitination
3786 O_BomoMSG13408_5prime_partial:A_BomoMSG_c24327_g1_i4
207bp
 leucine-rich_repeat_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0016567 P protein ubiquitination
3787 O_BomoMSG13409_complete:A_BomoMSG_c24328_g1_i1
128bp
 chromatin_complexes_subunit_BAP18_isoform_X6_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
3788 O_BomoMSG1340_5prime_partial:A_BomoMSG_c6140_g1_i1
194bp
3789 O_BomoMSG13410_internal:A_BomoMSG_c24328_g1_i3
122bp
 chromatin_complexes_subunit_BAP18_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
3790 O_BomoMSG13411_3prime_partial:A_BomoMSG_c24328_g1_i4
106bp
 chromatin_complexes_subunit_BAP18_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
3791 O_BomoMSG13412_complete:A_BomoMSG_c24331_g1_i1
135bp
 PREDICTED:_uncharacterized_protein_LOC103307937_[Acyrthosiphon_pisum]
3792 O_BomoMSG13413_internal:A_BomoMSG_c24334_g1_i1
743bp
 TBC1_domain_family_member_9_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0090630 P activation of GTPase activity
3793 O_BomoMSG13414_complete:A_BomoMSG_c24334_g1_i1
110bp
3794 O_BomoMSG13415_internal:A_BomoMSG_c24337_g1_i1
315bp
 LOW_QUALITY_PROTEIN:_kinesin-like_protein_KIF13A_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0003777 F microtubule motor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0030496 C midbody
GO:0030705 P cytoskeleton-dependent intracellular transport
GO:0032438 P melanosome organization
GO:0032588 C trans-Golgi network membrane
GO:0035459 P vesicle cargo loading
GO:0043001 P Golgi to plasma membrane protein transport
GO:0051301 P cell division
GO:0072383 P plus-end-directed vesicle transport along microtubule
3795 O_BomoMSG13416_3prime_partial:A_BomoMSG_c24337_g1_i1
99bp
3796 O_BomoMSG13417_3prime_partial:A_BomoMSG_c24339_g1_i1
231bp
 negative_elongation_factor_A_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
3797 O_BomoMSG13418_5prime_partial:A_BomoMSG_c24339_g1_i1
163bp
3798 O_BomoMSG13419_5prime_partial:A_BomoMSG_c24339_g1_i1
120bp
3799 O_BomoMSG1341_3prime_partial:A_BomoMSG_c6140_g1_i1
165bp
3800 O_BomoMSG13420_5prime_partial:A_BomoMSG_c24339_g1_i2
295bp
 negative_elongation_factor_A_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
3801 O_BomoMSG13421_complete:A_BomoMSG_c24339_g1_i2
105bp
3802 O_BomoMSG13422_internal:A_BomoMSG_c24339_g1_i3
313bp
 negative_elongation_factor_A_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
3803 O_BomoMSG13423_5prime_partial:A_BomoMSG_c24339_g1_i3
163bp
3804 O_BomoMSG13424_5prime_partial:A_BomoMSG_c24339_g1_i3
120bp
3805 O_BomoMSG13425_internal:A_BomoMSG_c24339_g1_i4
270bp
 negative_elongation_factor_A_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
3806 O_BomoMSG13426_5prime_partial:A_BomoMSG_c24339_g1_i4
120bp
3807 O_BomoMSG13427_internal:A_BomoMSG_c24340_g1_i1
268bp
 nitric_oxide_synthase_isoform_X1_[Bombyx_mori]
GO:0004517 F nitric-oxide synthase activity
GO:0005506 F iron ion binding
GO:0005516 F calmodulin binding
GO:0006809 P nitric oxide biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
3808 O_BomoMSG13428_internal:A_BomoMSG_c24341_g2_i1
143bp
 lipoyl_synthase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0009107 P lipoate biosynthetic process
GO:0016740 F transferase activity
GO:0016992 F lipoate synthase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
3809 O_BomoMSG13429_complete:A_BomoMSG_c24341_g1_i2
181bp
 lipoyl_synthase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0009107 P lipoate biosynthetic process
GO:0016740 F transferase activity
GO:0016992 F lipoate synthase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
3810 O_BomoMSG1342_5prime_partial:A_BomoMSG_c6140_g1_i1
161bp
 angiomotin_[Bombyx_mori]
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