SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3751 O_BomoMSG13377_3prime_partial:A_BomoMSG_c24312_g2_i1
386bp
 TRAS5,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3752 O_BomoMSG13378_complete:A_BomoMSG_c24312_g2_i1
187bp
3753 O_BomoMSG13379_3prime_partial:A_BomoMSG_c24312_g2_i2
435bp
 TRAS3_[Bombyx_mori]
3754 O_BomoMSG1337_complete:A_BomoMSG_c6127_g1_i1
127bp
3755 O_BomoMSG13380_complete:A_BomoMSG_c24312_g2_i2
187bp
3756 O_BomoMSG13381_complete:A_BomoMSG_c24312_g2_i2
179bp
3757 O_BomoMSG13382_5prime_partial:A_BomoMSG_c24312_g2_i2
178bp
 TRAS3_[Bombyx_mori]
3758 O_BomoMSG13383_complete:A_BomoMSG_c24312_g2_i2
107bp
3759 O_BomoMSG13384_internal:A_BomoMSG_c24313_g1_i1
117bp
 uncharacterized_protein_LOC101743310_isoform_X5_[Bombyx_mori]
3760 O_BomoMSG13385_complete:A_BomoMSG_c24314_g1_i1
188bp
 ADP-ribosylation_factor-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000819 P sister chromatid segregation
GO:0001666 P response to hypoxia
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030496 C midbody
GO:0032419 C extrinsic component of lysosome membrane
GO:0043014 F alpha-tubulin binding
GO:0048487 F beta-tubulin binding
GO:0051233 C spindle midzone
GO:0051301 P cell division
3761 O_BomoMSG13386_complete:A_BomoMSG_c24314_g1_i2
188bp
 ADP-ribosylation_factor-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000819 P sister chromatid segregation
GO:0001666 P response to hypoxia
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030496 C midbody
GO:0032419 C extrinsic component of lysosome membrane
GO:0043014 F alpha-tubulin binding
GO:0048487 F beta-tubulin binding
GO:0051233 C spindle midzone
GO:0051301 P cell division
3762 O_BomoMSG13387_complete:A_BomoMSG_c24316_g1_i1
115bp
3763 O_BomoMSG13388_5prime_partial:A_BomoMSG_c24317_g1_i1
198bp
 zinc_finger_protein_62_isoform_X1_[Bombyx_mori]
3764 O_BomoMSG13389_5prime_partial:A_BomoMSG_c24317_g1_i2
175bp
 zinc_finger_protein_62_isoform_X1_[Bombyx_mori]
3765 O_BomoMSG1338_5prime_partial:A_BomoMSG_c6127_g1_i1
122bp
 hypothetical_protein_ALC62_04822,_partial_[Cyphomyrmex_costatus]
3766 O_BomoMSG13390_internal:A_BomoMSG_c24319_g1_i2
217bp
 protein_arginine_methyltransferase_NDUFAF7_homolog,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0032981 P mitochondrial respiratory chain complex I assembly
3767 O_BomoMSG13391_internal:A_BomoMSG_c24322_g1_i1
107bp
 reverse_transcriptase,_partial_[Trilocha_sp._GAS-2011]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3768 O_BomoMSG13392_complete:A_BomoMSG_c24322_g2_i1
115bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110386319,_partial_[Bombyx_mori]
3769 O_BomoMSG13393_5prime_partial:A_BomoMSG_c24323_g1_i1
119bp
3770 O_BomoMSG13394_5prime_partial:A_BomoMSG_c24323_g1_i1
107bp
 DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
3771 O_BomoMSG13395_5prime_partial:A_BomoMSG_c24323_g1_i2
188bp
 DNA_repair_protein_XRCC1_isoform_X4_[Bombyx_mori]
3772 O_BomoMSG13396_complete:A_BomoMSG_c24323_g1_i2
144bp
3773 O_BomoMSG13397_5prime_partial:A_BomoMSG_c24323_g1_i2
101bp
3774 O_BomoMSG13398_3prime_partial:A_BomoMSG_c24323_g2_i1
99bp
 probable_ATP-dependent_RNA_helicase_DHX35_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
3775 O_BomoMSG13399_5prime_partial:A_BomoMSG_c24323_g1_i3
152bp
 DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
3776 O_BomoMSG1339_internal:A_BomoMSG_c6130_g1_i1
104bp
 zinc_finger_protein_81_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3777 O_BomoMSG133_internal:A_BomoMSG_c490_g1_i1
122bp
3778 O_BomoMSG13400_5prime_partial:A_BomoMSG_c24323_g1_i3
137bp
3779 O_BomoMSG13401_5prime_partial:A_BomoMSG_c24323_g1_i3
101bp
3780 O_BomoMSG13402_3prime_partial:A_BomoMSG_c24324_g1_i1
316bp
 PREDICTED:_uncharacterized_protein_LOC109528343_[Hippocampus_comes]
previous next from show/29137

- SilkBase 1999-2023 -