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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3331 O_BomoMSG1299_5prime_partial:A_BomoMSG_c5928_g1_i1
157bp
 protein_obstructor-E_[Bombyx_mori]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006030 P chitin metabolic process
GO:0006032 P chitin catabolic process
GO:0008061 F chitin binding
GO:0008152 P metabolic process
GO:0009620 P response to fungus
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
3332 O_BomoMSG129_internal:A_BomoMSG_c477_g1_i1
123bp
 division_abnormally_delayed_protein_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0016020 C membrane
GO:0030203 P glycosaminoglycan metabolic process
GO:0031225 C anchored component of membrane
GO:0043202 C lysosomal lumen
GO:0043395 F heparan sulfate proteoglycan binding
3333 O_BomoMSG12_internal:A_BomoMSG_c105_g1_i1
113bp
 DNA_topoisomerase_3-beta-1_[Bombyx_mori]
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0004520 F endodeoxyribonuclease activity
GO:0006265 P DNA topological change
GO:0016853 F isomerase activity
GO:0051965 P positive regulation of synapse assembly
3334 O_BomoMSG13000_5prime_partial:A_BomoMSG_c24140_g1_i5
332bp
 heat_shock_factor-d_isoform_X4_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
3335 O_BomoMSG13001_complete:A_BomoMSG_c24140_g1_i6
661bp
 heat_shock_factor-d_isoform_X4_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
3336 O_BomoMSG13002_complete:A_BomoMSG_c24140_g1_i6
116bp
3337 O_BomoMSG13003_complete:A_BomoMSG_c24140_g1_i7
626bp
 heat_shock_factor-d_isoform_X7_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
3338 O_BomoMSG13004_complete:A_BomoMSG_c24140_g1_i7
116bp
3339 O_BomoMSG13005_5prime_partial:A_BomoMSG_c24141_g1_i1
400bp
 bestrophin_homolog_18_isoform_X1_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0034707 C chloride channel complex
GO:1902476 P chloride transmembrane transport
3340 O_BomoMSG13006_complete:A_BomoMSG_c24141_g1_i1
116bp
3341 O_BomoMSG13007_5prime_partial:A_BomoMSG_c24141_g1_i2
485bp
 bestrophin-4_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0034707 C chloride channel complex
GO:1902476 P chloride transmembrane transport
3342 O_BomoMSG13008_complete:A_BomoMSG_c24141_g1_i2
116bp
3343 O_BomoMSG13009_complete:A_BomoMSG_c24142_g1_i1
334bp
 THO_complex_subunit_3_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0046784 P viral mRNA export from host cell nucleus
GO:0051028 P mRNA transport
3344 O_BomoMSG1300_internal:A_BomoMSG_c5931_g1_i1
110bp
 uncharacterized_protein_LOC101742849_[Bombyx_mori]
3345 O_BomoMSG13010_5prime_partial:A_BomoMSG_c24142_g1_i2
270bp
 THO_complex_subunit_3_[Bombyx_mori]
GO:0000445 C THO complex part of transcription export complex
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0051028 P mRNA transport
3346 O_BomoMSG13011_5prime_partial:A_BomoMSG_c24143_g1_i1
108bp
 transmembrane_protein_18_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031965 C nuclear membrane
3347 O_BomoMSG13012_5prime_partial:A_BomoMSG_c24143_g1_i3
108bp
 transmembrane_protein_18_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031965 C nuclear membrane
3348 O_BomoMSG13013_5prime_partial:A_BomoMSG_c24144_g1_i1
549bp
 85/88_kDa_calcium-independent_phospholipase_A2_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0004623 F phospholipase A2 activity
GO:0005516 F calmodulin binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006935 P chemotaxis
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007613 P memory
GO:0008152 P metabolic process
GO:0014832 P urinary bladder smooth muscle contraction
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019731 P antibacterial humoral response
GO:0019901 F protein kinase binding
GO:0032049 P cardiolipin biosynthetic process
GO:0034976 P response to endoplasmic reticulum stress
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0043008 F ATP-dependent protein binding
GO:0045909 P vasodilation
GO:0045921 P positive regulation of exocytosis
GO:0047499 F calcium-independent phospholipase A2 activity
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060135 P maternal process involved in female pregnancy
GO:0090037 P positive regulation of protein kinase C signaling
GO:0090200 P positive regulation of release of cytochrome c from mitochondria
GO:0090238 P positive regulation of arachidonic acid secretion
GO:1901339 P regulation of store-operated calcium channel activity
GO:2000304 P positive regulation of ceramide biosynthetic process
3349 O_BomoMSG13014_complete:A_BomoMSG_c24144_g1_i1
160bp
3350 O_BomoMSG13015_3prime_partial:A_BomoMSG_c24144_g1_i1
141bp
3351 O_BomoMSG13016_5prime_partial:A_BomoMSG_c24144_g1_i1
109bp
3352 O_BomoMSG13017_complete:A_BomoMSG_c24144_g1_i2
809bp
 85/88_kDa_calcium-independent_phospholipase_A2_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0004623 F phospholipase A2 activity
GO:0005516 F calmodulin binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006935 P chemotaxis
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007613 P memory
GO:0008152 P metabolic process
GO:0014832 P urinary bladder smooth muscle contraction
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019731 P antibacterial humoral response
GO:0019901 F protein kinase binding
GO:0032049 P cardiolipin biosynthetic process
GO:0034976 P response to endoplasmic reticulum stress
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0043008 F ATP-dependent protein binding
GO:0045909 P vasodilation
GO:0045921 P positive regulation of exocytosis
GO:0047499 F calcium-independent phospholipase A2 activity
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060135 P maternal process involved in female pregnancy
GO:0090037 P positive regulation of protein kinase C signaling
GO:0090200 P positive regulation of release of cytochrome c from mitochondria
GO:0090238 P positive regulation of arachidonic acid secretion
GO:1901339 P regulation of store-operated calcium channel activity
GO:2000304 P positive regulation of ceramide biosynthetic process
3353 O_BomoMSG13018_complete:A_BomoMSG_c24144_g1_i2
160bp
3354 O_BomoMSG13019_complete:A_BomoMSG_c24144_g1_i2
142bp
3355 O_BomoMSG1301_internal:A_BomoMSG_c5932_g1_i1
107bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
3356 O_BomoMSG13020_complete:A_BomoMSG_c24146_g1_i2
381bp
 kelch_domain-containing_protein_3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0051321 P meiotic cell cycle
3357 O_BomoMSG13021_complete:A_BomoMSG_c24146_g1_i2
104bp
3358 O_BomoMSG13022_complete:A_BomoMSG_c24147_g1_i1
709bp
 leukocyte_receptor_cluster_member_8_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3359 O_BomoMSG13023_complete:A_BomoMSG_c24147_g1_i3
696bp
 leukocyte_receptor_cluster_member_8_homolog_[Bombyx_mori]
GO:0005515 F protein binding
3360 O_BomoMSG13024_complete:A_BomoMSG_c24147_g1_i5
256bp
 leukocyte_receptor_cluster_member_8_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
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