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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3241 O_BomoMSG12918_5prime_partial:A_BomoMSG_c24106_g1_i1
211bp
3242 O_BomoMSG12919_complete:A_BomoMSG_c24106_g1_i1
150bp
3243 O_BomoMSG1291_5prime_partial:A_BomoMSG_c5870_g1_i1
104bp
3244 O_BomoMSG12920_complete:A_BomoMSG_c24107_g1_i1
250bp
 methyl-CpG-binding_domain_protein_3_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0000790 C chromatin
GO:0000792 C heterochromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006346 P DNA methylation-dependent heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007420 P brain development
GO:0007507 P heart development
GO:0007568 P aging
GO:0008327 F methyl-CpG binding
GO:0009888 P tissue development
GO:0014070 P response to organic cyclic compound
GO:0016573 P histone acetylation
GO:0016575 P histone deacetylation
GO:0016581 C NuRD complex
GO:0031492 F nucleosomal DNA binding
GO:0031667 P response to nutrient levels
GO:0032355 P response to estradiol
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0044030 P regulation of DNA methylation
GO:0048568 P embryonic organ development
GO:1901796 P regulation of signal transduction by p53 class mediator
3245 O_BomoMSG12921_internal:A_BomoMSG_c24108_g1_i1
350bp
 dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
3246 O_BomoMSG12922_5prime_partial:A_BomoMSG_c24109_g1_i1
144bp
 cAMP-specific_3',5'-cyclic_phosphodiesterase_isoform_X7_[Bombyx_mori]
GO:0000003 P reproduction
GO:0001661 P conditioned taste aversion
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005622 C intracellular anatomical structure
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0007268 P chemical synaptic transmission
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007623 P circadian rhythm
GO:0008081 F phosphoric diester hydrolase activity
GO:0008306 P associative learning
GO:0008355 P olfactory learning
GO:0009187 P cyclic nucleotide metabolic process
GO:0010738 P regulation of protein kinase A signaling
GO:0016787 F hydrolase activity
GO:0019933 P cAMP-mediated signaling
GO:0040040 P thermosensory behavior
GO:0045475 P locomotor rhythm
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0046958 P nonassociative learning
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048675 P axon extension
3247 O_BomoMSG12923_5prime_partial:A_BomoMSG_c24109_g1_i2
166bp
 cAMP-specific_3',5'-cyclic_phosphodiesterase_isoform_X7_[Bombyx_mori]
GO:0000003 P reproduction
GO:0001661 P conditioned taste aversion
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005622 C intracellular anatomical structure
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0007268 P chemical synaptic transmission
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007623 P circadian rhythm
GO:0008081 F phosphoric diester hydrolase activity
GO:0008306 P associative learning
GO:0008355 P olfactory learning
GO:0009187 P cyclic nucleotide metabolic process
GO:0010738 P regulation of protein kinase A signaling
GO:0016787 F hydrolase activity
GO:0019933 P cAMP-mediated signaling
GO:0040040 P thermosensory behavior
GO:0045475 P locomotor rhythm
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0046958 P nonassociative learning
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048675 P axon extension
3248 O_BomoMSG12924_5prime_partial:A_BomoMSG_c24109_g1_i3
197bp
 cAMP-specific_3',5'-cyclic_phosphodiesterase_isoform_X7_[Bombyx_mori]
GO:0000003 P reproduction
GO:0001661 P conditioned taste aversion
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005622 C intracellular anatomical structure
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0007268 P chemical synaptic transmission
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007623 P circadian rhythm
GO:0008081 F phosphoric diester hydrolase activity
GO:0008306 P associative learning
GO:0008355 P olfactory learning
GO:0009187 P cyclic nucleotide metabolic process
GO:0010738 P regulation of protein kinase A signaling
GO:0016787 F hydrolase activity
GO:0019933 P cAMP-mediated signaling
GO:0040040 P thermosensory behavior
GO:0045475 P locomotor rhythm
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0046958 P nonassociative learning
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048675 P axon extension
3249 O_BomoMSG12925_internal:A_BomoMSG_c24110_g1_i1
450bp
 pol_polyprotein,_partial_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
3250 O_BomoMSG12926_complete:A_BomoMSG_c24111_g1_i1
171bp
 D-tyrosyl-tRNA(Tyr)_deacylase_1_[Bombyx_mori]
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006399 P tRNA metabolic process
GO:0006450 P regulation of translational fidelity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0019478 P D-amino acid catabolic process
GO:0046872 F metal ion binding
GO:0051500 F D-tyrosyl-tRNA(Tyr) deacylase activity
3251 O_BomoMSG12927_5prime_partial:A_BomoMSG_c24112_g1_i1
121bp
3252 O_BomoMSG12928_complete:A_BomoMSG_c24113_g1_i2
357bp
 tumor_protein_p63-regulated_gene_1-like_protein_isoform_X1_[Bombyx_mori]
GO:0008021 C synaptic vesicle
GO:0008150 P biological_process
GO:0030054 C cell junction
GO:0031410 C cytoplasmic vesicle
GO:0042802 F identical protein binding
GO:0045202 C synapse
GO:0070062 C extracellular exosome
3253 O_BomoMSG12929_5prime_partial:A_BomoMSG_c24114_g1_i1
357bp
 kinesin-like_protein_costa_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0007228 P positive regulation of hh target transcription factor activity
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
3254 O_BomoMSG1292_internal:A_BomoMSG_c5879_g1_i1
103bp
 hypothetical_protein_WN55_02618_[Dufourea_novaeangliae]
3255 O_BomoMSG12930_complete:A_BomoMSG_c24116_g1_i1
516bp
 sialin_[Bombyx_mori]
GO:0005351 F carbohydrate:proton symporter activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006820 P anion transport
GO:0006865 P amino acid transport
GO:0015136 F sialic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015538 F sialic acid:proton symporter activity
GO:0015739 P sialic acid transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
GO:1905039 P carboxylic acid transmembrane transport
3256 O_BomoMSG12931_complete:A_BomoMSG_c24116_g1_i1
104bp
3257 O_BomoMSG12932_3prime_partial:A_BomoMSG_c24119_g1_i1
220bp
 tRNA-dihydrouridine(20)_synthase_[NAD(P)+]-like_isoform_X2_[Bombyx_mori]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003824 F catalytic activity
GO:0004860 F protein kinase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0060548 P negative regulation of cell death
3258 O_BomoMSG12933_3prime_partial:A_BomoMSG_c24119_g1_i2
445bp
 tRNA-dihydrouridine(20)_synthase_[NAD(P)+]-like_isoform_X1_[Bombyx_mori]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003824 F catalytic activity
GO:0004860 F protein kinase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0060548 P negative regulation of cell death
3259 O_BomoMSG12934_5prime_partial:A_BomoMSG_c24120_g1_i1
789bp
 uncharacterized_protein_LOC101739889_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005096 F GTPase activator activity
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
3260 O_BomoMSG12935_complete:A_BomoMSG_c24120_g1_i1
117bp
3261 O_BomoMSG12936_3prime_partial:A_BomoMSG_c24123_g1_i1
554bp
 solute_carrier_family_23_member_2_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006979 P response to oxidative stress
GO:0008520 F L-ascorbate:sodium symporter activity
GO:0009925 C basal plasma membrane
GO:0015229 F L-ascorbic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015882 P L-ascorbic acid transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0019852 P L-ascorbic acid metabolic process
GO:0035461 P vitamin transmembrane transport
GO:0055085 P transmembrane transport
GO:0070890 F L-ascorbate:sodium symporter activity
GO:0070904 P transepithelial L-ascorbic acid transport
GO:1905039 P carboxylic acid transmembrane transport
3262 O_BomoMSG12937_complete:A_BomoMSG_c24123_g1_i1
218bp
3263 O_BomoMSG12938_complete:A_BomoMSG_c24123_g1_i1
110bp
3264 O_BomoMSG12939_3prime_partial:A_BomoMSG_c24123_g1_i2
541bp
 solute_carrier_family_23_member_2_isoform_X4_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006979 P response to oxidative stress
GO:0008520 F L-ascorbate:sodium symporter activity
GO:0009925 C basal plasma membrane
GO:0015229 F L-ascorbic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015882 P L-ascorbic acid transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0019852 P L-ascorbic acid metabolic process
GO:0035461 P vitamin transmembrane transport
GO:0055085 P transmembrane transport
GO:0070890 F L-ascorbate:sodium symporter activity
GO:0070904 P transepithelial L-ascorbic acid transport
GO:1905039 P carboxylic acid transmembrane transport
3265 O_BomoMSG1293_internal:A_BomoMSG_c5898_g1_i1
109bp
 WD_repeat_and_FYVE_domain-containing_protein_3_isoform_X4_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
3266 O_BomoMSG12940_complete:A_BomoMSG_c24123_g1_i2
218bp
3267 O_BomoMSG12941_complete:A_BomoMSG_c24123_g1_i2
110bp
3268 O_BomoMSG12942_internal:A_BomoMSG_c24124_g1_i1
114bp
 uncharacterized_protein_LOC101743520_[Bombyx_mori]
3269 O_BomoMSG12943_complete:A_BomoMSG_c24124_g1_i2
131bp
 uncharacterized_protein_LOC101743520_[Bombyx_mori]
3270 O_BomoMSG12944_3prime_partial:A_BomoMSG_c24124_g1_i3
218bp
 uncharacterized_protein_LOC101743520_[Bombyx_mori]
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