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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3211 O_BomoMSG12891_internal:A_BomoMSG_c24087_g1_i2
160bp
 lysine-specific_demethylase_lid_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
3212 O_BomoMSG12892_3prime_partial:A_BomoMSG_c24088_g1_i1
672bp
 vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005884 C actin filament
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0006914 P autophagy
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0019904 F protein domain specific binding
GO:0019905 F syntaxin binding
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030139 C endocytic vesicle
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
GO:1902115 P regulation of organelle assembly
GO:1903364 P positive regulation of cellular protein catabolic process
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000643 P positive regulation of early endosome to late endosome transport
3213 O_BomoMSG12893_complete:A_BomoMSG_c24088_g1_i1
207bp
3214 O_BomoMSG12894_internal:A_BomoMSG_c24088_g1_i2
387bp
 vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005884 C actin filament
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0006914 P autophagy
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0019904 F protein domain specific binding
GO:0019905 F syntaxin binding
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030139 C endocytic vesicle
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
GO:1902115 P regulation of organelle assembly
GO:1903364 P positive regulation of cellular protein catabolic process
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000643 P positive regulation of early endosome to late endosome transport
3215 O_BomoMSG12895_5prime_partial:A_BomoMSG_c24088_g1_i2
136bp
3216 O_BomoMSG12896_complete:A_BomoMSG_c24089_g1_i1
169bp
 mid1-interacting_protein_1A_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
3217 O_BomoMSG12897_3prime_partial:A_BomoMSG_c24090_g1_i1
215bp
 uncharacterized_protein_LOC101741382_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021554 P optic nerve development
3218 O_BomoMSG12898_complete:A_BomoMSG_c24090_g1_i2
142bp
 uncharacterized_protein_LOC101741382_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021554 P optic nerve development
3219 O_BomoMSG12899_complete:A_BomoMSG_c24091_g1_i2
161bp
 putative_mitochondrial_ribosomal_protein_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
3220 O_BomoMSG1289_internal:A_BomoMSG_c5854_g1_i1
240bp
 uncharacterized_protein_LOC101738918_[Bombyx_mori]
3221 O_BomoMSG128_internal:A_BomoMSG_c476_g1_i1
107bp
3222 O_BomoMSG12900_5prime_partial:A_BomoMSG_c24092_g1_i1
117bp
 uncharacterized_protein_C1orf43_homolog_[Bombyx_mori]
3223 O_BomoMSG12901_5prime_partial:A_BomoMSG_c24092_g1_i2
253bp
 uncharacterized_protein_C1orf43_homolog_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3224 O_BomoMSG12902_5prime_partial:A_BomoMSG_c24093_g1_i1
363bp
 FAST_kinase_domain-containing_protein_5,_mitochondrial_[Bombyx_mori]
GO:0000963 P mitochondrial RNA processing
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0005739 C mitochondrion
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0019843 F rRNA binding
GO:0035770 C ribonucleoprotein granule
GO:0042645 C mitochondrial nucleoid
GO:0045333 P cellular respiration
3225 O_BomoMSG12903_internal:A_BomoMSG_c24095_g1_i1
873bp
 uncharacterized_protein_LOC101738347_isoform_X1_[Bombyx_mori]
3226 O_BomoMSG12904_complete:A_BomoMSG_c24095_g1_i1
179bp
3227 O_BomoMSG12905_complete:A_BomoMSG_c24095_g1_i1
127bp
3228 O_BomoMSG12906_internal:A_BomoMSG_c24095_g1_i2
574bp
 uncharacterized_protein_LOC101738347_isoform_X1_[Bombyx_mori]
3229 O_BomoMSG12907_complete:A_BomoMSG_c24095_g1_i2
179bp
3230 O_BomoMSG12908_internal:A_BomoMSG_c24095_g1_i3
642bp
 uncharacterized_protein_LOC101738347_isoform_X1_[Bombyx_mori]
3231 O_BomoMSG12909_complete:A_BomoMSG_c24095_g1_i3
179bp
3232 O_BomoMSG1290_internal:A_BomoMSG_c5869_g1_i1
99bp
 phospholipase_C_gamma_isoform_X1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005158 F insulin receptor binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006816 P calcium ion transport
GO:0007165 P signal transduction
GO:0007202 P activation of phospholipase C activity
GO:0008081 F phosphoric diester hydrolase activity
GO:0008180 C COP9 signalosome
GO:0009306 P protein secretion
GO:0009395 P phospholipid catabolic process
GO:0009629 P response to gravity
GO:0010243 P response to organonitrogen compound
GO:0010634 P positive regulation of epithelial cell migration
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0030027 C lamellipodium
GO:0032959 P inositol trisphosphate biosynthetic process
GO:0035556 P intracellular signal transduction
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042542 P response to hydrogen peroxide
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043278 P response to morphine
GO:0046872 F metal ion binding
GO:0051219 F phosphoprotein binding
GO:0071364 P cellular response to epidermal growth factor stimulus
GO:1901339 P regulation of store-operated calcium channel activity
3233 O_BomoMSG12910_5prime_partial:A_BomoMSG_c24098_g1_i1
148bp
 testis-expressed_protein_10_[Bombyx_mori]
3234 O_BomoMSG12911_5prime_partial:A_BomoMSG_c24098_g1_i2
434bp
 testis-expressed_protein_10_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0071339 C MLL1 complex
3235 O_BomoMSG12912_3prime_partial:A_BomoMSG_c24099_g1_i1
123bp
 dual_specificity_mitogen-activated_protein_kinase_kinase_6_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0001934 P positive regulation of protein phosphorylation
GO:0002931 P response to ischemia
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019901 F protein kinase binding
GO:0022602 P ovulation cycle process
GO:0032308 P positive regulation of prostaglandin secretion
GO:0042493 P response to xenobiotic stimulus
GO:0043065 P positive regulation of apoptotic process
GO:0051149 P positive regulation of muscle cell differentiation
GO:0051770 P positive regulation of nitric-oxide synthase biosynthetic process
GO:0060048 P cardiac muscle contraction
GO:0072709 P cellular response to sorbitol
3236 O_BomoMSG12913_5prime_partial:A_BomoMSG_c24099_g2_i1
219bp
 dual_specificity_mitogen-activated_protein_kinase_kinase_6_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019901 F protein kinase binding
GO:0060048 P cardiac muscle contraction
3237 O_BomoMSG12914_complete:A_BomoMSG_c24101_g1_i1
221bp
 uncharacterized_protein_LOC101746901_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
3238 O_BomoMSG12915_internal:A_BomoMSG_c24102_g1_i1
273bp
 cytosolic_carboxypeptidase-like_protein_5_isoform_X2_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0015631 F tubulin binding
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0035608 P protein deglutamylation
GO:0035611 P protein branching point deglutamylation
GO:0043009 P chordate embryonic development
GO:0046872 F metal ion binding
GO:0051607 P defense response to virus
GO:0060271 P cilium assembly
GO:0072686 C mitotic spindle
3239 O_BomoMSG12916_3prime_partial:A_BomoMSG_c24104_g1_i1
236bp
 PREDICTED:_uncharacterized_protein_LOC106138040_isoform_X1_[Amyelois_transitella]
GO:0000932 C P-body
GO:0002376 P immune system process
GO:0005080 F protein kinase C binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016236 P macroautophagy
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0042169 F SH2 domain binding
GO:0043122 P regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
3240 O_BomoMSG12917_3prime_partial:A_BomoMSG_c24106_g1_i1
344bp
 ectonucleoside_triphosphate_diphosphohydrolase_5_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0008894 F guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0017110 F nucleoside-diphosphatase activity
GO:0017111 F nucleoside-triphosphatase activity
GO:0032026 P response to magnesium ion
GO:0045134 F uridine-diphosphatase activity
GO:0051592 P response to calcium ion
GO:0070062 C extracellular exosome
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