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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3181 O_BomoMSG12864_internal:A_BomoMSG_c24074_g1_i1
386bp
 uncharacterized_protein_LOC101740634_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
3182 O_BomoMSG12865_complete:A_BomoMSG_c24074_g1_i1
131bp
 hypothetical_protein_UW60_C0012G0005_[Candidatus_Woesebacteria_bacterium_GW2011_GWA2_44_33]
3183 O_BomoMSG12866_3prime_partial:A_BomoMSG_c24074_g1_i2
449bp
 uncharacterized_protein_LOC101740634_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
3184 O_BomoMSG12867_complete:A_BomoMSG_c24074_g1_i2
131bp
 hypothetical_protein_UW60_C0012G0005_[Candidatus_Woesebacteria_bacterium_GW2011_GWA2_44_33]
3185 O_BomoMSG12868_internal:A_BomoMSG_c24074_g1_i3
269bp
 uncharacterized_protein_LOC101740634_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
3186 O_BomoMSG12869_complete:A_BomoMSG_c24074_g1_i3
131bp
 hypothetical_protein_UW60_C0012G0005_[Candidatus_Woesebacteria_bacterium_GW2011_GWA2_44_33]
3187 O_BomoMSG1286_5prime_partial:A_BomoMSG_c5817_g1_i1
138bp
3188 O_BomoMSG12870_internal:A_BomoMSG_c24077_g1_i1
327bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3189 O_BomoMSG12871_internal:A_BomoMSG_c24077_g1_i2
280bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3190 O_BomoMSG12872_internal:A_BomoMSG_c24077_g1_i3
254bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3191 O_BomoMSG12873_complete:A_BomoMSG_c24078_g1_i1
177bp
 PR_domain_zinc_finger_protein_5-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0001708 P cell fate specification
GO:0001827 P inner cell mass cell fate commitment
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007281 P germ cell development
GO:0007566 P embryo implantation
GO:0008168 F methyltransferase activity
GO:0009566 P fertilization
GO:0010468 P regulation of gene expression
GO:0016740 F transferase activity
GO:0019827 P stem cell population maintenance
GO:0030718 P germ-line stem cell population maintenance
GO:0031490 F chromatin DNA binding
GO:0032259 P methylation
GO:0034972 P histone H3-R26 methylation
GO:0035019 P somatic stem cell population maintenance
GO:0040029 P regulation of gene expression, epigenetic
GO:0040037 P negative regulation of fibroblast growth factor receptor signaling pathway
GO:0044030 P regulation of DNA methylation
GO:0046872 F metal ion binding
GO:0048873 P homeostasis of number of cells within a tissue
GO:0060817 P inactivation of paternal X chromosome
3192 O_BomoMSG12874_complete:A_BomoMSG_c24079_g1_i2
602bp
 vasa-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008104 P protein localization
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
3193 O_BomoMSG12875_complete:A_BomoMSG_c24079_g1_i2
100bp
3194 O_BomoMSG12876_5prime_partial:A_BomoMSG_c24079_g1_i3
462bp
 vasa-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008104 P protein localization
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
3195 O_BomoMSG12877_complete:A_BomoMSG_c24080_g1_i1
240bp
 tetraspanin_D107_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0002576 P platelet degranulation
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007160 P cell-matrix adhesion
GO:0009986 C cell surface
GO:0010008 C endosome membrane
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0030855 P epithelial cell differentiation
GO:0031088 C platelet dense granule membrane
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0031904 C endosome lumen
GO:0032403 F protein-containing complex binding
GO:0032585 C multivesicular body membrane
GO:0034613 P cellular protein localization
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0043234 C protein-containing complex
GO:0043473 P pigmentation
GO:0045785 P positive regulation of cell adhesion
GO:0045807 P positive regulation of endocytosis
GO:0048757 P pigment granule maturation
GO:0050931 P pigment cell differentiation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2000680 P obsolete regulation of rubidium ion transport
GO:2001046 P positive regulation of integrin-mediated signaling pathway
3196 O_BomoMSG12878_complete:A_BomoMSG_c24080_g1_i1
167bp
3197 O_BomoMSG12879_5prime_partial:A_BomoMSG_c24080_g1_i2
249bp
 tetraspanin_D107_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0002576 P platelet degranulation
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007160 P cell-matrix adhesion
GO:0009986 C cell surface
GO:0010008 C endosome membrane
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0030855 P epithelial cell differentiation
GO:0031088 C platelet dense granule membrane
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0031904 C endosome lumen
GO:0032403 F protein-containing complex binding
GO:0032585 C multivesicular body membrane
GO:0034613 P cellular protein localization
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0043234 C protein-containing complex
GO:0043473 P pigmentation
GO:0045785 P positive regulation of cell adhesion
GO:0045807 P positive regulation of endocytosis
GO:0048757 P pigment granule maturation
GO:0050931 P pigment cell differentiation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2000680 P obsolete regulation of rubidium ion transport
GO:2001046 P positive regulation of integrin-mediated signaling pathway
3198 O_BomoMSG1287_3prime_partial:A_BomoMSG_c5817_g1_i1
114bp
3199 O_BomoMSG12880_complete:A_BomoMSG_c24080_g1_i2
167bp
3200 O_BomoMSG12881_5prime_partial:A_BomoMSG_c24082_g1_i1
404bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743043_[Bombyx_mori]
3201 O_BomoMSG12882_3prime_partial:A_BomoMSG_c24082_g1_i1
334bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743043_[Bombyx_mori]
3202 O_BomoMSG12883_complete:A_BomoMSG_c24082_g1_i1
175bp
3203 O_BomoMSG12884_complete:A_BomoMSG_c24083_g1_i1
101bp
 probable_DNA-directed_RNA_polymerases_I_and_III_subunit_RPAC2_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0005736 C RNA polymerase I complex
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0006383 P transcription by RNA polymerase III
GO:0046983 F protein dimerization activity
3204 O_BomoMSG12885_complete:A_BomoMSG_c24085_g2_i1
158bp
 retinal_rod_rhodopsin-sensitive_cGMP_3',5'-cyclic_phosphodiesterase_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005095 F GTPase inhibitor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007601 P visual perception
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0034260 P negative regulation of GTPase activity
GO:0042995 C cell projection
GO:0050896 P response to stimulus
3205 O_BomoMSG12886_internal:A_BomoMSG_c24086_g1_i1
467bp
 origin_recognition_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
3206 O_BomoMSG12887_complete:A_BomoMSG_c24086_g1_i1
132bp
3207 O_BomoMSG12888_internal:A_BomoMSG_c24086_g1_i2
546bp
 origin_recognition_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
3208 O_BomoMSG12889_complete:A_BomoMSG_c24086_g1_i2
132bp
3209 O_BomoMSG1288_internal:A_BomoMSG_c5821_g1_i1
114bp
 gasp_precursor_[Bombyx_mori]
3210 O_BomoMSG12890_internal:A_BomoMSG_c24087_g1_i1
228bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_lysine-specific_demethylase_lid-like_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
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