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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3151 O_BomoMSG12837_5prime_partial:A_BomoMSG_c24062_g1_i1
220bp
 ras-like_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
3152 O_BomoMSG12838_complete:A_BomoMSG_c24062_g1_i2
201bp
 ras-like_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
3153 O_BomoMSG12839_complete:A_BomoMSG_c24063_g1_i1
239bp
 uncharacterized_protein_LOC101740193_isoform_X1_[Bombyx_mori]
3154 O_BomoMSG1283_3prime_partial:A_BomoMSG_c5809_g1_i1
147bp
3155 O_BomoMSG12840_complete:A_BomoMSG_c24064_g1_i1
738bp
 zinc_finger_protein_677_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3156 O_BomoMSG12841_complete:A_BomoMSG_c24064_g1_i2
733bp
 zinc_finger_protein_677_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3157 O_BomoMSG12842_3prime_partial:A_BomoMSG_c24065_g1_i1
567bp
 putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3158 O_BomoMSG12843_internal:A_BomoMSG_c24065_g1_i2
515bp
 putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3159 O_BomoMSG12844_3prime_partial:A_BomoMSG_c24065_g1_i3
567bp
 putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3160 O_BomoMSG12845_internal:A_BomoMSG_c24065_g1_i4
540bp
 putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3161 O_BomoMSG12846_5prime_partial:A_BomoMSG_c24067_g1_i1
101bp
3162 O_BomoMSG12847_3prime_partial:A_BomoMSG_c24069_g1_i1
175bp
 uncharacterized_protein_LOC101742101_[Bombyx_mori]
3163 O_BomoMSG12848_3prime_partial:A_BomoMSG_c24070_g1_i1
651bp
 sericin_2_isoform_2_precursor_[Bombyx_mori]
3164 O_BomoMSG12849_3prime_partial:A_BomoMSG_c24070_g1_i1
152bp
 PREDICTED:_uncharacterized_protein_LOC105010700_isoform_X1_[Esox_lucius]
GO:0000974 C Prp19 complex
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006366 P transcription by RNA polymerase II
GO:0014070 P response to organic cyclic compound
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0033120 P positive regulation of RNA splicing
GO:0034587 P piRNA metabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071453 P cellular response to oxygen levels
3165 O_BomoMSG1284_internal:A_BomoMSG_c5811_g1_i1
206bp
 uncharacterized_protein_LOC110385625,_partial_[Bombyx_mori]
3166 O_BomoMSG12850_complete:A_BomoMSG_c24070_g1_i1
116bp
3167 O_BomoMSG12851_internal:A_BomoMSG_c24070_g1_i3
171bp
 sericin_2_isoform_1_precursor_[Bombyx_mori]
3168 O_BomoMSG12852_complete:A_BomoMSG_c24070_g1_i4
700bp
 sericin_2_isoform_1_precursor_[Bombyx_mori]
3169 O_BomoMSG12853_3prime_partial:A_BomoMSG_c24070_g1_i4
152bp
 PREDICTED:_uncharacterized_protein_LOC105010700_isoform_X1_[Esox_lucius]
GO:0000974 C Prp19 complex
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006366 P transcription by RNA polymerase II
GO:0014070 P response to organic cyclic compound
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0033120 P positive regulation of RNA splicing
GO:0034587 P piRNA metabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071453 P cellular response to oxygen levels
3170 O_BomoMSG12854_complete:A_BomoMSG_c24070_g1_i4
116bp
3171 O_BomoMSG12855_complete:A_BomoMSG_c24070_g1_i4
116bp
3172 O_BomoMSG12856_5prime_partial:A_BomoMSG_c24070_g1_i5
249bp
 sericin_2_isoform_2_precursor_[Bombyx_mori]
3173 O_BomoMSG12857_internal:A_BomoMSG_c24071_g1_i1
451bp
 segment_polarity_protein_dishevelled_[Bombyx_mori]
GO:0005109 F frizzled binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0008013 F beta-catenin binding
GO:0016055 P Wnt signaling pathway
GO:0030030 P cell projection organization
GO:0032053 P ciliary basal body organization
GO:0035556 P intracellular signal transduction
GO:0042384 P cilium assembly
GO:0060070 P canonical Wnt signaling pathway
GO:0090179 P planar cell polarity pathway involved in neural tube closure
3174 O_BomoMSG12858_complete:A_BomoMSG_c24071_g1_i1
115bp
3175 O_BomoMSG12859_internal:A_BomoMSG_c24071_g1_i2
511bp
 segment_polarity_protein_dishevelled_[Bombyx_mori]
GO:0005109 F frizzled binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0008013 F beta-catenin binding
GO:0016055 P Wnt signaling pathway
GO:0030030 P cell projection organization
GO:0032053 P ciliary basal body organization
GO:0035556 P intracellular signal transduction
GO:0042384 P cilium assembly
GO:0060070 P canonical Wnt signaling pathway
GO:0090179 P planar cell polarity pathway involved in neural tube closure
3176 O_BomoMSG1285_internal:A_BomoMSG_c5817_g1_i1
164bp
 copper-transporting_ATPase_2_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0004008 F P-type divalent copper transporter activity
GO:0005375 F copper ion transmembrane transporter activity
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005923 C bicellular tight junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0006882 P cellular zinc ion homeostasis
GO:0007595 P lactation
GO:0007623 P circadian rhythm
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0010043 P response to zinc ion
GO:0015677 P copper ion import
GO:0015680 P protein maturation by copper ion transfer
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0030001 P metal ion transport
GO:0032588 C trans-Golgi network membrane
GO:0034220 P ion transmembrane transport
GO:0035434 P copper ion transmembrane transport
GO:0043682 F P-type divalent copper transporter activity
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051208 P sequestering of calcium ion
GO:0051591 P response to cAMP
GO:0060003 P copper ion export
3177 O_BomoMSG12860_complete:A_BomoMSG_c24071_g1_i2
115bp
3178 O_BomoMSG12861_3prime_partial:A_BomoMSG_c24072_g1_i2
239bp
 U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X1_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000481 P maturation of 5S rRNA
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007050 P regulation of cell cycle
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0045585 P positive regulation of cytotoxic T cell differentiation
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071013 C catalytic step 2 spliceosome
GO:0097193 P intrinsic apoptotic signaling pathway
3179 O_BomoMSG12862_complete:A_BomoMSG_c24072_g1_i2
114bp
3180 O_BomoMSG12863_internal:A_BomoMSG_c24072_g1_i3
157bp
 U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000481 P maturation of 5S rRNA
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007050 P regulation of cell cycle
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0045585 P positive regulation of cytotoxic T cell differentiation
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071013 C catalytic step 2 spliceosome
GO:0097193 P intrinsic apoptotic signaling pathway
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