Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
3001	O_BomoMSG12701_5prime_partial:A_BomoMSG_c23966_g1_i1 203bp	Bomo_Chr23	extensin_[Bombyx_mori]
3002	O_BomoMSG12702_internal:A_BomoMSG_c23967_g1_i1 263bp	Bomo_Scaf007	DNA_excision_repair_protein_ERCC-6_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000303 P response to superoxide GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003682 F chromatin binding GO:0004386 F helicase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006281 P DNA repair GO:0006283 P transcription-coupled nucleotide-excision repair GO:0006284 P base-excision repair GO:0006290 P pyrimidine dimer repair GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006362 P transcription elongation from RNA polymerase I promoter GO:0006366 P transcription by RNA polymerase II GO:0006974 P cellular response to DNA damage stimulus GO:0006979 P response to oxidative stress GO:0007256 P obsolete activation of JNKK activity GO:0007257 P obsolete activation of JUN kinase activity GO:0008022 F protein C-terminus binding GO:0008023 C transcription elongation factor complex GO:0008094 F ATP-dependent activity, acting on DNA GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage GO:0009411 P response to UV GO:0009636 P response to toxic substance GO:0010165 P response to X-ray GO:0010224 P response to UV-B GO:0010332 P response to gamma radiation GO:0016787 F hydrolase activity GO:0030296 F protein tyrosine kinase activator activity GO:0032403 F protein-containing complex binding GO:0032784 P regulation of DNA-templated transcription, elongation GO:0032786 P positive regulation of DNA-templated transcription, elongation GO:0035264 P multicellular organism growth GO:0045494 P photoreceptor cell maintenance GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation GO:0047485 F protein N-terminus binding GO:0061098 P positive regulation of protein tyrosine kinase activity
3003	O_BomoMSG12703_3prime_partial:A_BomoMSG_c23971_g1_i1 588bp	Bomo_Chr15	uncharacterized_protein_LOC101738297_[Bombyx_mori]	GO:0046872 F metal ion binding
3004	O_BomoMSG12704_internal:A_BomoMSG_c23972_g1_i1 528bp	Bomo_Chr23	transcription_initiation_factor_TFIID_subunit_4-like_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0008270 F zinc ion binding GO:0046872 F metal ion binding
3005	O_BomoMSG12705_complete:A_BomoMSG_c23972_g1_i1 170bp	Bomo_Chr23
3006	O_BomoMSG12706_internal:A_BomoMSG_c23972_g1_i2 386bp	Bomo_Chr23	uncharacterized_protein_LOC105841441_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0008270 F zinc ion binding GO:0046872 F metal ion binding
3007	O_BomoMSG12707_complete:A_BomoMSG_c23972_g1_i2 170bp	Bomo_Chr23
3008	O_BomoMSG12708_internal:A_BomoMSG_c23973_g1_i1 100bp	Bomo_Chr14	LOW_QUALITY_PROTEIN:_neurobeachin_[Bombyx_mori]
3009	O_BomoMSG12709_internal:A_BomoMSG_c23973_g1_i2 331bp	Bomo_Chr14	LOW_QUALITY_PROTEIN:_neurobeachin_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0007528 P neuromuscular junction development GO:0007614 P short-term memory GO:0008104 P protein localization GO:0008355 P olfactory learning GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016319 P mushroom body development GO:0042462 P eye photoreceptor cell development GO:0042675 P compound eye cone cell differentiation GO:0043025 C neuronal cell body GO:0043204 C perikaryon GO:0051018 F protein kinase A binding
3010	O_BomoMSG1270_5prime_partial:A_BomoMSG_c5747_g1_i1 214bp	Bomo_Chr10	putative_ubiquitin-protein_ligase_[Danaus_plexippus_plexippus]	GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process
3011	O_BomoMSG12710_3prime_partial:A_BomoMSG_c23973_g1_i2 146bp	Bomo_Chr14
3012	O_BomoMSG12711_complete:A_BomoMSG_c23973_g1_i2 123bp	Bomo_Chr14
3013	O_BomoMSG12712_complete:A_BomoMSG_c23973_g1_i2 106bp	Bomo_Chr14
3014	O_BomoMSG12713_internal:A_BomoMSG_c23973_g1_i3 368bp	Bomo_Chr14	LOW_QUALITY_PROTEIN:_neurobeachin_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0007528 P neuromuscular junction development GO:0007614 P short-term memory GO:0008104 P protein localization GO:0008355 P olfactory learning GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016319 P mushroom body development GO:0042462 P eye photoreceptor cell development GO:0042675 P compound eye cone cell differentiation GO:0043025 C neuronal cell body GO:0043204 C perikaryon GO:0051018 F protein kinase A binding
3015	O_BomoMSG12714_3prime_partial:A_BomoMSG_c23973_g1_i3 146bp	Bomo_Chr14
3016	O_BomoMSG12715_complete:A_BomoMSG_c23976_g1_i1 111bp	Bomo_Chr25	N-acetylneuraminate_lyase_[Bombyx_mori]
3017	O_BomoMSG12716_complete:A_BomoMSG_c23976_g1_i2 230bp	Bomo_Chr25	N-acetylneuraminate_lyase_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005737 C cytoplasm GO:0005975 P carbohydrate metabolic process GO:0008152 P metabolic process GO:0008747 F N-acetylneuraminate lyase activity GO:0016829 F lyase activity GO:0019262 P N-acetylneuraminate catabolic process
3018	O_BomoMSG12717_complete:A_BomoMSG_c23977_g1_i1 229bp	Bomo_Chr25	N-alpha-acetyltransferase_40_isoform_X1_[Bombyx_mori]	GO:0005575 C cellular_component GO:0008080 F N-acetyltransferase activity GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016746 F acyltransferase activity
3019	O_BomoMSG12718_5prime_partial:A_BomoMSG_c23979_g1_i2 563bp	Bomo_Chr12	uncharacterized_protein_LOC101741728_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004556 F alpha-amylase activity GO:0005737 C cytoplasm GO:0005975 P carbohydrate metabolic process GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0043169 F cation binding GO:0046872 F metal ion binding
3020	O_BomoMSG12719_complete:A_BomoMSG_c23979_g1_i3 622bp	Bomo_Chr12	uncharacterized_protein_LOC101741728_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004556 F alpha-amylase activity GO:0005737 C cytoplasm GO:0005975 P carbohydrate metabolic process GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0043169 F cation binding GO:0046872 F metal ion binding
3021	O_BomoMSG1271_internal:A_BomoMSG_c5749_g1_i1 103bp	Bomo_Chr28	RNA-directed_DNA_polymerase_from_mobile_element_jockey,_partial_[Trachymyrmex_septentrionalis]	GO:0003964 F RNA-directed DNA polymerase activity GO:0005575 C cellular_component GO:0006278 P RNA-dependent DNA biosynthetic process GO:0006313 P transposition, DNA-mediated GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity
3022	O_BomoMSG12720_5prime_partial:A_BomoMSG_c23979_g1_i4 163bp	Bomo_Chr12	uncharacterized_protein_LOC110385754_[Bombyx_mori]
3023	O_BomoMSG12721_5prime_partial:A_BomoMSG_c23980_g1_i1 170bp	Bomo_Chr17	Uncharacterized_protein_OBRU01_22018_[Operophtera_brumata]
3024	O_BomoMSG12722_complete:A_BomoMSG_c23980_g1_i1 142bp	Bomo_Chr17	Uncharacterized_protein_OBRU01_22018_[Operophtera_brumata]
3025	O_BomoMSG12723_5prime_partial:A_BomoMSG_c23980_g1_i2 170bp	Bomo_Chr17	Uncharacterized_protein_OBRU01_22018_[Operophtera_brumata]
3026	O_BomoMSG12724_complete:A_BomoMSG_c23981_g1_i1 118bp	Bomo_Chr19	store-operated_calcium_entry_regulator_STIMATE_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005246 F calcium channel regulator activity GO:0005515 F protein binding GO:0005575 C cellular_component GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0008150 P biological_process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0032237 P activation of store-operated calcium channel activity GO:0032541 C cortical endoplasmic reticulum GO:0035584 P calcium-mediated signaling using intracellular calcium source GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
3027	O_BomoMSG12725_complete:A_BomoMSG_c23981_g1_i2 252bp	Bomo_Chr19	store-operated_calcium_entry_regulator_STIMATE_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005246 F calcium channel regulator activity GO:0005515 F protein binding GO:0005575 C cellular_component GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0008150 P biological_process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0032237 P activation of store-operated calcium channel activity GO:0032541 C cortical endoplasmic reticulum GO:0035584 P calcium-mediated signaling using intracellular calcium source GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
3028	O_BomoMSG12726_5prime_partial:A_BomoMSG_c23982_g1_i1 442bp	Bomo_Chr1	catalase_[Bombyx_mori]	GO:0003007 P heart morphogenesis GO:0004096 F catalase activity GO:0004601 F peroxidase activity GO:0005739 C mitochondrion GO:0005777 C peroxisome GO:0005886 C plasma membrane GO:0006979 P response to oxidative stress GO:0007568 P aging GO:0008340 P determination of adult lifespan GO:0016209 F antioxidant activity GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules GO:0016491 F oxidoreductase activity GO:0020037 F heme binding GO:0035206 P regulation of hemocyte proliferation GO:0038001 P paracrine signaling GO:0042542 P response to hydrogen peroxide GO:0042744 P hydrogen peroxide catabolic process GO:0045471 P response to ethanol GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process GO:0072593 P reactive oxygen species metabolic process GO:0098869 P cellular oxidant detoxification
3029	O_BomoMSG12727_complete:A_BomoMSG_c23982_g1_i1 138bp	Bomo_Chr1
3030	O_BomoMSG12728_complete:A_BomoMSG_c23982_g1_i2 508bp	Bomo_Chr1	catalase_[Bombyx_mori]	GO:0003007 P heart morphogenesis GO:0004096 F catalase activity GO:0004601 F peroxidase activity GO:0005739 C mitochondrion GO:0005777 C peroxisome GO:0005886 C plasma membrane GO:0006979 P response to oxidative stress GO:0007568 P aging GO:0008340 P determination of adult lifespan GO:0016209 F antioxidant activity GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules GO:0016491 F oxidoreductase activity GO:0020037 F heme binding GO:0035206 P regulation of hemocyte proliferation GO:0038001 P paracrine signaling GO:0042542 P response to hydrogen peroxide GO:0042744 P hydrogen peroxide catabolic process GO:0045471 P response to ethanol GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process GO:0072593 P reactive oxygen species metabolic process GO:0098869 P cellular oxidant detoxification