SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2971 O_BomoMSG12675_internal:A_BomoMSG_c23948_g1_i1
404bp
 ubiquitin_carboxyl-terminal_hydrolase_43_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019785 F ISG15-specific protease activity
GO:0019985 P translesion synthesis
GO:0036459 F thiol-dependent deubiquitinase
2972 O_BomoMSG12676_internal:A_BomoMSG_c23949_g1_i1
101bp
 uncharacterized_protein_LOC110384711_isoform_X3_[Bombyx_mori]
2973 O_BomoMSG12677_complete:A_BomoMSG_c23950_g1_i1
222bp
 exosome_complex_component_CSL4_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
2974 O_BomoMSG12678_complete:A_BomoMSG_c23950_g1_i1
134bp
2975 O_BomoMSG12679_complete:A_BomoMSG_c23951_g1_i1
683bp
 zinc_finger_protein_208-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
2976 O_BomoMSG1267_internal:A_BomoMSG_c5725_g1_i1
139bp
 uncharacterized_protein_LOC101735791_[Bombyx_mori]
2977 O_BomoMSG12680_internal:A_BomoMSG_c23952_g1_i1
521bp
 spatacsin_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008088 P axo-dendritic transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0048675 P axon extension
GO:0070062 C extracellular exosome
2978 O_BomoMSG12681_internal:A_BomoMSG_c23952_g1_i2
410bp
 spatacsin_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008088 P axo-dendritic transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0048675 P axon extension
GO:0070062 C extracellular exosome
2979 O_BomoMSG12682_complete:A_BomoMSG_c23954_g1_i1
271bp
 glucosamine-6-phosphate_isomerase_2_isoform_X2_[Bombyx_mori]
GO:0004342 F glucosamine-6-phosphate deaminase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006044 P N-acetylglucosamine metabolic process
GO:0016787 F hydrolase activity
2980 O_BomoMSG12683_complete:A_BomoMSG_c23954_g1_i1
119bp
 Uncharacterised_protein_[Shigella_sonnei]
2981 O_BomoMSG12684_complete:A_BomoMSG_c23954_g1_i1
103bp
2982 O_BomoMSG12685_complete:A_BomoMSG_c23954_g1_i2
279bp
 glucosamine-6-phosphate_isomerase_isoform_X1_[Bombyx_mori]
GO:0004342 F glucosamine-6-phosphate deaminase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006044 P N-acetylglucosamine metabolic process
GO:0016787 F hydrolase activity
2983 O_BomoMSG12686_complete:A_BomoMSG_c23954_g1_i2
119bp
 Uncharacterised_protein_[Shigella_sonnei]
2984 O_BomoMSG12687_complete:A_BomoMSG_c23954_g1_i2
103bp
2985 O_BomoMSG12688_internal:A_BomoMSG_c23955_g1_i1
240bp
 RNA_polymerase_II-associated_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2986 O_BomoMSG12689_3prime_partial:A_BomoMSG_c23955_g1_i2
387bp
 RNA_polymerase_II-associated_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2987 O_BomoMSG1268_complete:A_BomoMSG_c5734_g1_i1
275bp
 prohibitin_protein_WPH_[Bombyx_mori]
GO:0002165 P instar larval or pupal development
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0019233 P sensory perception of pain
GO:0071456 P cellular response to hypoxia
2988 O_BomoMSG12690_3prime_partial:A_BomoMSG_c23956_g1_i2
163bp
 uncharacterized_protein_LOC105841433_[Bombyx_mori]
2989 O_BomoMSG12691_internal:A_BomoMSG_c23958_g1_i1
199bp
 iron-sulfur_cluster_co-chaperone_protein_HscB,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051087 F chaperone binding
GO:0051259 P protein complex oligomerization
2990 O_BomoMSG12692_5prime_partial:A_BomoMSG_c23959_g1_i1
126bp
 TM2_domain-containing_protein_CG10795_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2991 O_BomoMSG12693_5prime_partial:A_BomoMSG_c23959_g1_i2
230bp
 TM2_domain-containing_protein_CG10795_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2992 O_BomoMSG12694_3prime_partial:A_BomoMSG_c23960_g1_i1
166bp
 uncharacterized_protein_LOC101745679,_partial_[Bombyx_mori]
2993 O_BomoMSG12695_complete:A_BomoMSG_c23960_g1_i1
130bp
2994 O_BomoMSG12696_internal:A_BomoMSG_c23961_g1_i1
372bp
 transcriptional_regulator_ATRX_[Danaus_plexippus_plexippus]
2995 O_BomoMSG12697_complete:A_BomoMSG_c23961_g1_i1
111bp
2996 O_BomoMSG12698_complete:A_BomoMSG_c23962_g1_i1
252bp
 ribosome_maturation_protein_SBDS_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0008017 F microtubule binding
GO:0008150 P biological_process
GO:0008283 P cell population proliferation
GO:0019843 F rRNA binding
GO:0030282 P bone mineralization
GO:0030595 P leukocyte chemotaxis
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0048539 P bone marrow development
2997 O_BomoMSG12699_5prime_partial:A_BomoMSG_c23965_g1_i1
251bp
 putative_ATPase_N2B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
2998 O_BomoMSG1269_internal:A_BomoMSG_c5745_g1_i1
113bp
 exocyst_complex_component_4_[Bombyx_mori]
2999 O_BomoMSG126_internal:A_BomoMSG_c469_g1_i1
110bp
 uncharacterized_protein_LOC101738425_isoform_X3_[Bombyx_mori]
3000 O_BomoMSG12700_5prime_partial:A_BomoMSG_c23965_g1_i2
125bp
 putative_ATPase_N2B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0008150 P biological_process
previous next from show/29137

- SilkBase 1999-2023 -