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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2941 O_BomoMSG12648_complete:A_BomoMSG_c23927_g1_i3
148bp
2942 O_BomoMSG12649_complete:A_BomoMSG_c23928_g1_i1
214bp
 motile_sperm_domain-containing_protein_1-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048471 C perinuclear region of cytoplasm
2943 O_BomoMSG1264_internal:A_BomoMSG_c5710_g1_i1
193bp
 zinc_finger_protein_26_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2944 O_BomoMSG12650_complete:A_BomoMSG_c23929_g1_i2
135bp
 mediator_of_RNA_polymerase_II_transcription_subunit_11_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007517 P muscle organ development
GO:0016592 C mediator complex
GO:0048813 P dendrite morphogenesis
2945 O_BomoMSG12651_complete:A_BomoMSG_c23931_g1_i1
293bp
 nuclear_transcription_factor_Y_subunit_alpha_isoform_X2_[Bombyx_mori]
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0032993 C protein-DNA complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
2946 O_BomoMSG12652_internal:A_BomoMSG_c23932_g1_i1
510bp
 centaurin-gamma-1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0072375 P medium-term memory
2947 O_BomoMSG12653_5prime_partial:A_BomoMSG_c23932_g1_i1
124bp
2948 O_BomoMSG12654_complete:A_BomoMSG_c23932_g1_i1
120bp
2949 O_BomoMSG12655_5prime_partial:A_BomoMSG_c23934_g1_i1
267bp
 mismatch_repair_endonuclease_PMS2_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0042493 P response to xenobiotic stimulus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2950 O_BomoMSG12656_5prime_partial:A_BomoMSG_c23934_g1_i1
146bp
 Chromatin_assembly_factor_1_subunit_[Operophtera_brumata]
2951 O_BomoMSG12657_3prime_partial:A_BomoMSG_c23934_g1_i1
128bp
 mismatch_repair_endonuclease_PMS2_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2952 O_BomoMSG12658_internal:A_BomoMSG_c23934_g1_i2
398bp
 mismatch_repair_endonuclease_PMS2_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2953 O_BomoMSG12659_5prime_partial:A_BomoMSG_c23934_g1_i2
147bp
 Chromatin_assembly_factor_1_subunit_[Operophtera_brumata]
2954 O_BomoMSG1265_internal:A_BomoMSG_c5717_g1_i1
122bp
 Uncharacterized_protein_OBRU01_01369_[Operophtera_brumata]
2955 O_BomoMSG12660_5prime_partial:A_BomoMSG_c23937_g1_i1
455bp
 serine_protease_inhibitor_3_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0009411 P response to UV
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030162 P regulation of proteolysis
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
GO:1902173 P negative regulation of keratinocyte apoptotic process
2956 O_BomoMSG12661_5prime_partial:A_BomoMSG_c23937_g1_i2
101bp
 serine_protease_inhibitor_3_precursor_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
2957 O_BomoMSG12662_complete:A_BomoMSG_c23937_g1_i3
459bp
 serine_protease_inhibitor_3_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0009411 P response to UV
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030162 P regulation of proteolysis
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
GO:1902173 P negative regulation of keratinocyte apoptotic process
2958 O_BomoMSG12663_3prime_partial:A_BomoMSG_c23938_g1_i1
794bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
2959 O_BomoMSG12664_complete:A_BomoMSG_c23938_g1_i1
143bp
2960 O_BomoMSG12665_3prime_partial:A_BomoMSG_c23938_g1_i2
774bp
 huntingtin-interacting_protein_1_isoform_X4_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
2961 O_BomoMSG12666_complete:A_BomoMSG_c23938_g1_i2
143bp
2962 O_BomoMSG12667_3prime_partial:A_BomoMSG_c23938_g1_i3
778bp
 huntingtin-interacting_protein_1_isoform_X4_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
2963 O_BomoMSG12668_complete:A_BomoMSG_c23938_g1_i3
143bp
2964 O_BomoMSG12669_internal:A_BomoMSG_c23939_g2_i1
297bp
 zinc_finger_protein_277_[Bombyx_mori]
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070301 P cellular response to hydrogen peroxide
GO:2000772 P regulation of cellular senescence
2965 O_BomoMSG1266_internal:A_BomoMSG_c5719_g1_i1
156bp
 chaoptin_[Bombyx_mori]
2966 O_BomoMSG12670_complete:A_BomoMSG_c23944_g1_i1
371bp
 peroxisomal_biogenesis_factor_3_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0003333 P amino acid transmembrane transport
GO:0005654 C nucleoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005887 C integral component of plasma membrane
GO:0007031 P peroxisome organization
GO:0008289 F lipid binding
GO:0015171 F amino acid transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016557 P peroxisome membrane biogenesis
GO:0032994 C protein-lipid complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0045046 P protein import into peroxisome membrane
GO:0046983 F protein dimerization activity
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
2967 O_BomoMSG12671_internal:A_BomoMSG_c23945_g1_i2
172bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2968 O_BomoMSG12672_3prime_partial:A_BomoMSG_c23946_g1_i1
155bp
 glutathione_S-transferase_delta_3_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0018833 F DDT-dehydrochlorinase activity
2969 O_BomoMSG12673_internal:A_BomoMSG_c23947_g1_i1
263bp
 probable_cysteine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
2970 O_BomoMSG12674_3prime_partial:A_BomoMSG_c23947_g1_i2
487bp
 probable_cysteine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
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