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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2881 O_BomoMSG12594_complete:A_BomoMSG_c23897_g1_i1
145bp
 hypothetical_protein_ASF40_20730_[Microbacterium_sp._Leaf288]
2882 O_BomoMSG12595_complete:A_BomoMSG_c23897_g1_i1
124bp
 hypothetical_protein_VIGAN_08105000_[Vigna_angularis_var._angularis]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2883 O_BomoMSG12596_complete:A_BomoMSG_c23897_g1_i1
103bp
 156aa_long_hypothetical_protein_[Pyrococcus_horikoshii_OT3]
2884 O_BomoMSG12597_complete:A_BomoMSG_c23901_g1_i1
185bp
 general_odorant-binding_protein_70_[Bombyx_mori]
GO:0005549 F odorant binding
GO:0005576 C extracellular region
GO:0006810 P transport
GO:0007608 P sensory perception of smell
GO:0050896 P response to stimulus
2885 O_BomoMSG12598_5prime_partial:A_BomoMSG_c23902_g1_i1
496bp
 LOW_QUALITY_PROTEIN:_N6-adenosine-methyltransferase_70_kDa_subunit_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006382 P adenosine to inosine editing
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0010467 P gene expression
GO:0016422 F mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0019827 P stem cell population maintenance
GO:0031053 P primary miRNA processing
GO:0032259 P methylation
GO:0036396 C RNA N6-methyladenosine methyltransferase complex
GO:0048511 P rhythmic process
GO:0061157 P mRNA destabilization
GO:0080009 P mRNA methylation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990744 P primary miRNA methylation
2886 O_BomoMSG12599_3prime_partial:A_BomoMSG_c23902_g1_i1
99bp
2887 O_BomoMSG1259_complete:A_BomoMSG_c5691_g1_i2
188bp
 nucleoplasmin_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0016584 P nucleosome positioning
GO:0035041 P sperm DNA decondensation
GO:0042393 F histone binding
GO:0042623 F ATP hydrolysis activity
2888 O_BomoMSG125_internal:A_BomoMSG_c455_g1_i1
140bp
 ankyrin-3-like_[Helicoverpa_armigera]
GO:0002027 P regulation of heart rate
GO:0003283 P atrial septum development
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006874 P cellular calcium ion homeostasis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0008093 F cytoskeletal anchor activity
GO:0010628 P positive regulation of gene expression
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010882 P regulation of cardiac muscle contraction by calcium ion signaling
GO:0014704 C intercalated disc
GO:0016020 C membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0030913 P paranodal junction assembly
GO:0031430 C M band
GO:0031647 P regulation of protein stability
GO:0031672 C A band
GO:0033292 P T-tubule organization
GO:0033365 P protein localization to organelle
GO:0034394 P protein localization to cell surface
GO:0034613 P cellular protein localization
GO:0036309 P protein localization to M-band
GO:0036371 P protein localization to T-tubule
GO:0042383 C sarcolemma
GO:0043005 C neuron projection
GO:0043034 C costamere
GO:0043268 P positive regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050821 P protein stabilization
GO:0051117 F ATPase binding
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0051597 P response to methylmercury
GO:0051924 P regulation of calcium ion transport
GO:0051928 P positive regulation of calcium ion transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060307 P regulation of ventricular cardiac muscle cell membrane repolarization
GO:0070296 P sarcoplasmic reticulum calcium ion transport
GO:0070972 P protein localization to endoplasmic reticulum
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0086004 P regulation of cardiac muscle cell contraction
GO:0086005 P ventricular cardiac muscle cell action potential
GO:0086014 P atrial cardiac muscle cell action potential
GO:0086015 P SA node cell action potential
GO:0086046 P membrane depolarization during SA node cell action potential
GO:0086066 P atrial cardiac muscle cell to AV node cell communication
GO:0086070 P SA node cell to atrial cardiac muscle cell communication
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0098907 P regulation of SA node cell action potential
GO:0098910 P regulation of atrial cardiac muscle cell action potential
GO:1901018 P positive regulation of potassium ion transmembrane transporter activity
GO:1901019 P regulation of calcium ion transmembrane transporter activity
GO:1901021 P positive regulation of calcium ion transmembrane transporter activity
GO:2001259 P positive regulation of cation channel activity
2889 O_BomoMSG12600_complete:A_BomoMSG_c23902_g1_i2
414bp
 LOW_QUALITY_PROTEIN:_N6-adenosine-methyltransferase_70_kDa_subunit_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008168 F methyltransferase activity
GO:0008593 P regulation of Notch signaling pathway
GO:0016422 F mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030707 P ovarian follicle cell development
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0032259 P methylation
GO:0060968 P obsolete regulation of gene silencing
GO:0080009 P mRNA methylation
2890 O_BomoMSG12601_complete:A_BomoMSG_c23903_g1_i1
104bp
2891 O_BomoMSG12602_internal:A_BomoMSG_c23905_g1_i1
150bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
2892 O_BomoMSG12603_3prime_partial:A_BomoMSG_c23905_g2_i1
451bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006336 P DNA replication-independent chromatin assembly
GO:0007166 P cell surface receptor signaling pathway
GO:0014823 P response to activity
GO:0016235 C aggresome
GO:0016568 P chromatin organization
GO:0019904 F protein domain specific binding
GO:0030346 F protein phosphatase 2B binding
GO:0031491 F nucleosome binding
GO:0043086 P negative regulation of catalytic activity
GO:0060548 P negative regulation of cell death
2893 O_BomoMSG12604_complete:A_BomoMSG_c23905_g2_i1
101bp
2894 O_BomoMSG12605_internal:A_BomoMSG_c23905_g2_i2
189bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
2895 O_BomoMSG12606_internal:A_BomoMSG_c23905_g2_i3
182bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
2896 O_BomoMSG12607_complete:A_BomoMSG_c23906_g1_i1
210bp
 FGFR1_oncogene_partner_2_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0042060 P wound healing
GO:0042803 F protein homodimerization activity
2897 O_BomoMSG12608_complete:A_BomoMSG_c23908_g1_i1
251bp
 phosphomannomutase_1_[Bombyx_mori]
GO:0004615 F phosphomannomutase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006013 P mannose metabolic process
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
2898 O_BomoMSG12609_internal:A_BomoMSG_c23909_g1_i1
449bp
 PREDICTED:_uncharacterized_protein_LOC106130202_isoform_X1_[Amyelois_transitella]
GO:0002446 P neutrophil mediated immunity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030854 P positive regulation of granulocyte differentiation
GO:0032259 P methylation
GO:0042119 P neutrophil activation
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043231 C intracellular membrane-bounded organelle
GO:0045171 C intercellular bridge
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048384 P retinoic acid receptor signaling pathway
GO:0051568 P histone H3-K4 methylation
GO:0070688 C obsolete MLL5-L complex
GO:0071300 P cellular response to retinoic acid
2899 O_BomoMSG1260_complete:A_BomoMSG_c5692_g1_i1
111bp
2900 O_BomoMSG12610_5prime_partial:A_BomoMSG_c23909_g1_i1
171bp
2901 O_BomoMSG12611_internal:A_BomoMSG_c23910_g1_i1
228bp
 regulator_of_telomere_elongation_helicase_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008026 F helicase activity
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0032508 P DNA duplex unwinding
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
2902 O_BomoMSG12612_internal:A_BomoMSG_c23911_g1_i1
236bp
 uncharacterized_protein_LOC101736380_[Bombyx_mori]
2903 O_BomoMSG12613_internal:A_BomoMSG_c23911_g1_i2
214bp
 uncharacterized_protein_LOC101736380_[Bombyx_mori]
2904 O_BomoMSG12614_complete:A_BomoMSG_c23912_g1_i1
305bp
 uncharacterized_protein_LOC101735685_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000287 F magnesium ion binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005737 C cytoplasm
GO:0006259 P DNA metabolic process
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016888 F endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2905 O_BomoMSG12615_internal:A_BomoMSG_c23913_g1_i1
178bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
2906 O_BomoMSG12616_internal:A_BomoMSG_c23913_g1_i2
150bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
2907 O_BomoMSG12617_internal:A_BomoMSG_c23913_g1_i3
124bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
2908 O_BomoMSG12618_5prime_partial:A_BomoMSG_c23914_g1_i2
330bp
 arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0003677 F DNA binding
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0016023 C cytoplasmic vesicle
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0045109 P intermediate filament organization
GO:0046872 F metal ion binding
2909 O_BomoMSG12619_complete:A_BomoMSG_c23914_g1_i3
358bp
 arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0003677 F DNA binding
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0016023 C cytoplasmic vesicle
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0045109 P intermediate filament organization
GO:0046872 F metal ion binding
2910 O_BomoMSG1261_internal:A_BomoMSG_c5704_g1_i1
114bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
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