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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2851 O_BomoMSG12567_complete:A_BomoMSG_c23880_g2_i1
287bp
 15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016323 C basolateral plasma membrane
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
2852 O_BomoMSG12568_5prime_partial:A_BomoMSG_c23881_g1_i1
140bp
 MATS1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0007059 P chromosome segregation
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0030707 P ovarian follicle cell development
GO:0046872 F metal ion binding
GO:0071174 P mitotic spindle checkpoint signaling
2853 O_BomoMSG12569_complete:A_BomoMSG_c23881_g1_i2
218bp
 MOB_kinase_activator-like_1_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0007059 P chromosome segregation
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0030707 P ovarian follicle cell development
GO:0046872 F metal ion binding
GO:0071174 P mitotic spindle checkpoint signaling
2854 O_BomoMSG1256_5prime_partial:A_BomoMSG_c5687_g1_i1
155bp
 unnamed_protein_product_[Tetraodon_nigroviridis]
2855 O_BomoMSG12570_complete:A_BomoMSG_c23882_g1_i1
167bp
 PREDICTED:_UPF0547_protein_C16orf87_homolog_isoform_X3_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2856 O_BomoMSG12571_internal:A_BomoMSG_c23883_g1_i1
241bp
 PREDICTED:_uncharacterized_protein_LOC108757418_[Trachymyrmex_cornetzi]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2857 O_BomoMSG12572_complete:A_BomoMSG_c23884_g1_i2
319bp
 uncharacterized_protein_LOC101738833_[Bombyx_mori]
2858 O_BomoMSG12573_5prime_partial:A_BomoMSG_c23885_g1_i1
101bp
 protein_goliath_isoform_X2_[Bombyx_mori]
GO:0001707 P mesoderm formation
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005768 C endosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
2859 O_BomoMSG12574_5prime_partial:A_BomoMSG_c23885_g1_i2
278bp
 protein_goliath_isoform_X1_[Bombyx_mori]
GO:0001707 P mesoderm formation
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005768 C endosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
2860 O_BomoMSG12575_3prime_partial:A_BomoMSG_c23887_g1_i1
219bp
 alpha-esterase_45_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
2861 O_BomoMSG12576_internal:A_BomoMSG_c23887_g1_i2
219bp
 alpha-esterase_45_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
2862 O_BomoMSG12577_internal:A_BomoMSG_c23889_g1_i1
131bp
 uncharacterized_protein_LOC101744677_[Bombyx_mori]
2863 O_BomoMSG12578_5prime_partial:A_BomoMSG_c23889_g1_i1
105bp
2864 O_BomoMSG12579_3prime_partial:A_BomoMSG_c23889_g1_i2
177bp
 uncharacterized_protein_LOC101744677_[Bombyx_mori]
2865 O_BomoMSG1257_internal:A_BomoMSG_c5690_g1_i1
199bp
 zinc_finger_protein_62_homolog_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2866 O_BomoMSG12580_5prime_partial:A_BomoMSG_c23889_g1_i2
118bp
2867 O_BomoMSG12581_3prime_partial:A_BomoMSG_c23890_g1_i1
232bp
 DTW_domain-containing_protein_2_[Bombyx_mori]
GO:1903955 P positive regulation of protein targeting to mitochondrion
2868 O_BomoMSG12582_complete:A_BomoMSG_c23890_g1_i1
122bp
2869 O_BomoMSG12583_internal:A_BomoMSG_c23890_g1_i2
179bp
 DTW_domain-containing_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:1903955 P positive regulation of protein targeting to mitochondrion
2870 O_BomoMSG12584_3prime_partial:A_BomoMSG_c23891_g1_i1
141bp
 ribonucleases_P/MRP_protein_subunit_POP1_[Bombyx_mori]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0001682 P tRNA 5'-leader removal
GO:0004526 F ribonuclease P activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0016078 P tRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2871 O_BomoMSG12585_internal:A_BomoMSG_c23891_g2_i1
196bp
 ribonucleases_P/MRP_protein_subunit_POP1_[Bombyx_mori]
GO:0001682 P tRNA 5'-leader removal
GO:0004526 F ribonuclease P activity
GO:0006396 P RNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2872 O_BomoMSG12586_internal:A_BomoMSG_c23891_g3_i1
427bp
 ribonucleases_P/MRP_protein_subunit_POP1_[Bombyx_mori]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0001682 P tRNA 5'-leader removal
GO:0004526 F ribonuclease P activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0016078 P tRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2873 O_BomoMSG12587_internal:A_BomoMSG_c23891_g3_i2
158bp
 ribonucleases_P/MRP_protein_subunit_POP1_[Bombyx_mori]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0001682 P tRNA 5'-leader removal
GO:0004526 F ribonuclease P activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0016078 P tRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2874 O_BomoMSG12588_internal:A_BomoMSG_c23892_g1_i1
103bp
 protein_Daple_[Bombyx_mori]
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016055 P Wnt signaling pathway
GO:0030165 F PDZ domain binding
GO:0031098 P stress-activated protein kinase signaling cascade
GO:0031648 P protein destabilization
GO:0043621 F protein self-association
GO:0051260 P protein homooligomerization
2875 O_BomoMSG12589_internal:A_BomoMSG_c23892_g2_i1
553bp
 protein_Daple_[Bombyx_mori]
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016055 P Wnt signaling pathway
GO:0030165 F PDZ domain binding
GO:0031098 P stress-activated protein kinase signaling cascade
GO:0031648 P protein destabilization
GO:0043621 F protein self-association
GO:0051260 P protein homooligomerization
2876 O_BomoMSG1258_complete:A_BomoMSG_c5691_g1_i1
172bp
 nucleoplasmin_isoform_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0016584 P nucleosome positioning
GO:0035041 P sperm DNA decondensation
GO:0042393 F histone binding
GO:0042623 F ATP hydrolysis activity
2877 O_BomoMSG12590_internal:A_BomoMSG_c23894_g1_i1
224bp
 nuclear_pore_complex_protein_Nup88_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0000056 P ribosomal small subunit export from nucleus
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0007067 P mitotic cell cycle
GO:0015031 P protein transport
GO:0051028 P mRNA transport
2878 O_BomoMSG12591_3prime_partial:A_BomoMSG_c23894_g1_i2
367bp
 nuclear_pore_complex_protein_Nup88_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0000056 P ribosomal small subunit export from nucleus
GO:0002376 P immune system process
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006955 P immune response
GO:0007424 P open tracheal system development
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031965 C nuclear membrane
GO:0035147 P branch fusion, open tracheal system
GO:0046826 P negative regulation of protein export from nucleus
GO:0051028 P mRNA transport
2879 O_BomoMSG12592_internal:A_BomoMSG_c23895_g1_i1
231bp
 serine/threonine-protein_kinase_SMG1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000723 P telomere maintenance
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0042162 F telomeric DNA binding
GO:0044822 F RNA binding
GO:0046777 P protein autophosphorylation
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
2880 O_BomoMSG12593_complete:A_BomoMSG_c23897_g1_i1
464bp
 elongation_factor_1-alpha_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006414 P translational elongation
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