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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2641 O_BomoMSG12378_3prime_partial:A_BomoMSG_c23769_g1_i1
404bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0060001 F minus-end directed microfilament motor activity
GO:0072659 P protein localization to plasma membrane
2642 O_BomoMSG12379_complete:A_BomoMSG_c23769_g1_i1
106bp
2643 O_BomoMSG1237_5prime_partial:A_BomoMSG_c5596_g1_i1
132bp
2644 O_BomoMSG12380_internal:A_BomoMSG_c23769_g2_i1
167bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0003824 F catalytic activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0070062 C extracellular exosome
2645 O_BomoMSG12381_internal:A_BomoMSG_c23769_g2_i1
167bp
2646 O_BomoMSG12382_complete:A_BomoMSG_c23771_g1_i1
150bp
 uncharacterized_protein_LOC101742993_[Bombyx_mori]
2647 O_BomoMSG12383_5prime_partial:A_BomoMSG_c23772_g1_i1
122bp
 hypothetical_protein_RR48_01602_[Papilio_machaon]
2648 O_BomoMSG12384_5prime_partial:A_BomoMSG_c23774_g1_i1
356bp
 DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2649 O_BomoMSG12385_internal:A_BomoMSG_c23775_g1_i1
230bp
 ankyrin_repeat_domain-containing_protein_17_[Bombyx_mori]
2650 O_BomoMSG12386_internal:A_BomoMSG_c23777_g1_i1
128bp
 pol_polyprotein,_partial_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2651 O_BomoMSG12387_internal:A_BomoMSG_c23777_g2_i1
218bp
 protease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2652 O_BomoMSG12388_complete:A_BomoMSG_c23778_g1_i1
279bp
 three_prime_repair_exonuclease_2_isoform_X1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2653 O_BomoMSG12389_complete:A_BomoMSG_c23778_g1_i2
133bp
 transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2654 O_BomoMSG1238_5prime_partial:A_BomoMSG_c5596_g1_i1
127bp
2655 O_BomoMSG12390_complete:A_BomoMSG_c23778_g1_i3
279bp
 three_prime_repair_exonuclease_2_isoform_X1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2656 O_BomoMSG12391_5prime_partial:A_BomoMSG_c23778_g1_i4
129bp
 three_prime_repair_exonuclease_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006259 P DNA metabolic process
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032405 F MutLalpha complex binding
GO:0032407 F MutSalpha complex binding
GO:0032558 F adenyl deoxyribonucleotide binding
GO:0035458 P cellular response to interferon-beta
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2657 O_BomoMSG12392_complete:A_BomoMSG_c23778_g1_i5
133bp
 transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2658 O_BomoMSG12393_3prime_partial:A_BomoMSG_c23780_g1_i1
178bp
 sphingomyelin_synthase-related_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0046513 P ceramide biosynthetic process
GO:2000303 P regulation of ceramide biosynthetic process
2659 O_BomoMSG12394_complete:A_BomoMSG_c23782_g2_i2
336bp
 solute_carrier_family_2,_facilitated_glucose_transporter_member_8_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2660 O_BomoMSG12395_complete:A_BomoMSG_c23782_g2_i2
125bp
2661 O_BomoMSG12396_complete:A_BomoMSG_c23782_g2_i2
118bp
2662 O_BomoMSG12397_complete:A_BomoMSG_c23782_g2_i3
489bp
 solute_carrier_family_2,_facilitated_glucose_transporter_member_8_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2663 O_BomoMSG12398_complete:A_BomoMSG_c23782_g2_i3
125bp
2664 O_BomoMSG12399_complete:A_BomoMSG_c23782_g2_i3
118bp
2665 O_BomoMSG1239_internal:A_BomoMSG_c5598_g1_i1
236bp
 myosin-11-like_[Bombyx_mori]
GO:0000242 C pericentriolar material
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007099 P centriole replication
GO:0030030 P cell projection organization
GO:0098535 P de novo centriole assembly involved in multi-ciliated epithelial cell differentiation
GO:0098536 C deuterosome
2666 O_BomoMSG123_internal:A_BomoMSG_c429_g1_i2
130bp
 actin_cytoskeleton-regulatory_complex_protein_pan-1-like_[Bombyx_mori]
2667 O_BomoMSG12400_internal:A_BomoMSG_c23783_g1_i1
116bp
 LOW_QUALITY_PROTEIN:_titin_[Bombyx_mori]
2668 O_BomoMSG12401_internal:A_BomoMSG_c23783_g1_i1
116bp
2669 O_BomoMSG12402_internal:A_BomoMSG_c23783_g1_i1
115bp
 hypothetical_protein_TcasGA2_TC009430_[Tribolium_castaneum]
2670 O_BomoMSG12403_internal:A_BomoMSG_c23783_g2_i1
232bp
 LOW_QUALITY_PROTEIN:_titin_[Bombyx_mori]
GO:0000103 P sulfate assimilation
GO:0001520 C outer dense fiber
GO:0004791 F thioredoxin-disulfide reductase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0006662 P glycerol ether metabolic process
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0015035 F protein-disulfide reductase activity
GO:0016671 F oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0030154 P cell differentiation
GO:0034599 P cellular response to oxidative stress
GO:0045454 P cell redox homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
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