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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2611 O_BomoMSG12350_5prime_partial:A_BomoMSG_c23748_g1_i1
105bp
 coiled-coil_and_C2_domain-containing_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000281 P mitotic cytokinesis
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006886 P intracellular protein transport
GO:0007219 P Notch signaling pathway
GO:0007423 P sensory organ development
GO:0007472 P wing disc morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008593 P regulation of Notch signaling pathway
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0030100 P regulation of endocytosis
GO:0036257 P multivesicular body organization
GO:0045035 P sensory organ precursor cell division
GO:0045732 P positive regulation of protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048749 P compound eye development
2612 O_BomoMSG12351_complete:A_BomoMSG_c23748_g1_i1
100bp
2613 O_BomoMSG12352_complete:A_BomoMSG_c23751_g1_i1
838bp
 acinus_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
2614 O_BomoMSG12353_complete:A_BomoMSG_c23751_g1_i3
838bp
 acinus_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
2615 O_BomoMSG12354_5prime_partial:A_BomoMSG_c23752_g2_i1
120bp
 serine/threonine-protein_kinase_RIO3_[Bombyx_mori]
2616 O_BomoMSG12355_5prime_partial:A_BomoMSG_c23753_g1_i1
429bp
 uncharacterized_protein_LOC101738779_[Bombyx_mori]
2617 O_BomoMSG12356_complete:A_BomoMSG_c23753_g1_i1
107bp
2618 O_BomoMSG12357_complete:A_BomoMSG_c23753_g1_i2
519bp
 uncharacterized_protein_LOC101738779_[Bombyx_mori]
2619 O_BomoMSG12358_complete:A_BomoMSG_c23753_g1_i2
107bp
2620 O_BomoMSG12359_internal:A_BomoMSG_c23754_g1_i2
250bp
 E3_ubiquitin-protein_ligase_NEDD4_isoform_X6_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
2621 O_BomoMSG1235_internal:A_BomoMSG_c5589_g1_i1
292bp
 transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000124 C SAGA complex
GO:0000281 P mitotic cytokinesis
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035222 P wing disc pattern formation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043486 P histone exchange
GO:0043966 P histone H3 acetylation
GO:0045747 P positive regulation of Notch signaling pathway
2622 O_BomoMSG12360_internal:A_BomoMSG_c23754_g1_i3
262bp
 E3_ubiquitin-protein_ligase_Nedd-4_isoform_X3_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
2623 O_BomoMSG12361_5prime_partial:A_BomoMSG_c23754_g1_i3
115bp
2624 O_BomoMSG12362_internal:A_BomoMSG_c23754_g1_i4
108bp
 E3_ubiquitin-protein_ligase_Nedd-4_isoform_X5_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
2625 O_BomoMSG12363_internal:A_BomoMSG_c23755_g1_i1
145bp
 DNA_cytosine-5_methyltransferase_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2626 O_BomoMSG12364_5prime_partial:A_BomoMSG_c23756_g1_i1
526bp
 juvenile_hormone_epoxide_hydrolase-like_protein_3_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019439 P aromatic compound catabolic process
GO:0031090 C organelle membrane
GO:0033961 F cis-stilbene-oxide hydrolase activity
GO:0043231 C intracellular membrane-bounded organelle
2627 O_BomoMSG12365_5prime_partial:A_BomoMSG_c23756_g1_i2
150bp
 juvenile_hormone_epoxide_hydrolase-like_protein_3_isoform_X1_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0004602 F glutathione peroxidase activity
GO:0005737 C cytoplasm
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0047066 F phospholipid-hydroperoxide glutathione peroxidase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
2628 O_BomoMSG12366_5prime_partial:A_BomoMSG_c23757_g1_i1
506bp
 conserved_oligomeric_Golgi_complex_subunit_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0007112 P male meiosis cytokinesis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0022008 P neurogenesis
GO:0033227 P dsRNA transport
2629 O_BomoMSG12367_internal:A_BomoMSG_c23761_g1_i1
239bp
 integrator_complex_subunit_1,_partial_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
2630 O_BomoMSG12368_3prime_partial:A_BomoMSG_c23761_g1_i2
415bp
 integrator_complex_subunit_1,_partial_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
2631 O_BomoMSG12369_internal:A_BomoMSG_c23763_g1_i1
188bp
 nuclear_distribution_protein_nudE-like_1_isoform_X1_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000226 P microtubule cytoskeleton organization
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0001764 P neuron migration
GO:0001833 P inner cell mass cell proliferation
GO:0005515 F protein binding
GO:0005635 C nuclear envelope
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0006508 P proteolysis
GO:0006810 P transport
GO:0007020 P microtubule nucleation
GO:0007059 P chromosome segregation
GO:0007100 P mitotic centrosome separation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008017 F microtubule binding
GO:0008021 C synaptic vesicle
GO:0008090 P retrograde axonal transport
GO:0010975 P regulation of neuron projection development
GO:0016477 P cell migration
GO:0021799 P cerebral cortex radially oriented cell migration
GO:0021955 P central nervous system neuron axonogenesis
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0031175 P neuron projection development
GO:0031252 C cell leading edge
GO:0032403 F protein-containing complex binding
GO:0033157 P regulation of intracellular protein transport
GO:0043014 F alpha-tubulin binding
GO:0043203 C axon hillock
GO:0043547 P positive regulation of GTPase activity
GO:0044297 C cell body
GO:0045773 P positive regulation of axon extension
GO:0047496 P vesicle transport along microtubule
GO:0048487 F beta-tubulin binding
GO:0048680 P positive regulation of axon regeneration
GO:0051081 P nuclear membrane disassembly
GO:0051303 P establishment of chromosome localization
GO:0051642 P centrosome localization
GO:0060052 P neurofilament cytoskeleton organization
GO:0060053 C neurofilament cytoskeleton
GO:0070012 F oligopeptidase activity
GO:0090630 P activation of GTPase activity
GO:1904115 C axon cytoplasm
GO:1990138 P neuron projection extension
2632 O_BomoMSG1236_internal:A_BomoMSG_c5589_g1_i2
167bp
 transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000124 C SAGA complex
GO:0000281 P mitotic cytokinesis
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035222 P wing disc pattern formation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043486 P histone exchange
GO:0043966 P histone H3 acetylation
GO:0045747 P positive regulation of Notch signaling pathway
2633 O_BomoMSG12370_3prime_partial:A_BomoMSG_c23763_g2_i1
116bp
 nuclear_distribution_protein_nudE-like_1-B_isoform_X2_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0007020 P microtubule nucleation
GO:0007059 P chromosome segregation
GO:0007100 P mitotic centrosome separation
GO:0008017 F microtubule binding
GO:0010975 P regulation of neuron projection development
GO:0016477 P cell migration
GO:0047496 P vesicle transport along microtubule
GO:0051303 P establishment of chromosome localization
GO:0051642 P centrosome localization
2634 O_BomoMSG12371_3prime_partial:A_BomoMSG_c23763_g2_i2
116bp
 nuclear_distribution_protein_nudE-like_1-B_isoform_X2_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0007020 P microtubule nucleation
GO:0007059 P chromosome segregation
GO:0007100 P mitotic centrosome separation
GO:0008017 F microtubule binding
GO:0010975 P regulation of neuron projection development
GO:0016477 P cell migration
GO:0047496 P vesicle transport along microtubule
GO:0051303 P establishment of chromosome localization
GO:0051642 P centrosome localization
2635 O_BomoMSG12372_5prime_partial:A_BomoMSG_c23763_g1_i3
206bp
 nuclear_distribution_protein_nudE-like_1-B_isoform_X2_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000132 P establishment of mitotic spindle orientation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0007020 P microtubule nucleation
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007100 P mitotic centrosome separation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007405 P neuroblast proliferation
GO:0008017 F microtubule binding
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0019904 F protein domain specific binding
GO:0021987 P cerebral cortex development
GO:0030154 P cell differentiation
GO:0030900 P forebrain development
GO:0031023 P microtubule organizing center organization
GO:0031616 C spindle pole centrosome
GO:0032154 C cleavage furrow
GO:0042802 F identical protein binding
GO:0045202 C synapse
GO:0047496 P vesicle transport along microtubule
GO:0051298 P centrosome duplication
GO:0051301 P cell division
GO:0051303 P establishment of chromosome localization
GO:0051642 P centrosome localization
2636 O_BomoMSG12373_internal:A_BomoMSG_c23765_g1_i1
151bp
 DNA_repair_protein_complementing_XP-A_cells_homolog_[Bombyx_mori]
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0046872 F metal ion binding
GO:0070914 P UV-damage excision repair
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
2637 O_BomoMSG12374_3prime_partial:A_BomoMSG_c23765_g1_i2
141bp
 DNA_repair_protein_complementing_XP-A_cells_homolog_[Bombyx_mori]
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0046872 F metal ion binding
GO:0070914 P UV-damage excision repair
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
2638 O_BomoMSG12375_3prime_partial:A_BomoMSG_c23766_g1_i1
134bp
 histone_deacetylase_3_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070491 F DNA-binding transcription factor binding
GO:0070932 P histone H3 deacetylation
2639 O_BomoMSG12376_complete:A_BomoMSG_c23766_g1_i1
113bp
2640 O_BomoMSG12377_3prime_partial:A_BomoMSG_c23767_g1_i2
370bp
 gastrula_zinc_finger_protein_XlCGF17.1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
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