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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2551 O_BomoMSG12297_5prime_partial:A_BomoMSG_c23717_g1_i3
102bp
2552 O_BomoMSG12298_complete:A_BomoMSG_c23718_g1_i2
244bp
 uncharacterized_protein_LOC110383269_[Helicoverpa_armigera]
2553 O_BomoMSG12299_3prime_partial:A_BomoMSG_c23718_g1_i3
176bp
 uncharacterized_protein_LOC110383269_[Helicoverpa_armigera]
2554 O_BomoMSG1229_internal:A_BomoMSG_c5580_g1_i1
134bp
2555 O_BomoMSG122_5prime_partial:A_BomoMSG_c429_g1_i1
102bp
2556 O_BomoMSG12300_complete:A_BomoMSG_c23721_g2_i1
141bp
2557 O_BomoMSG12301_3prime_partial:A_BomoMSG_c23724_g1_i1
251bp
 protein_FAM91A1_[Bombyx_mori]
GO:0005575 C cellular_component
2558 O_BomoMSG12302_internal:A_BomoMSG_c23724_g1_i2
237bp
 protein_FAM91A1_[Bombyx_mori]
GO:0005575 C cellular_component
2559 O_BomoMSG12303_internal:A_BomoMSG_c23724_g1_i3
206bp
 protein_FAM91A1_[Bombyx_mori]
GO:0005575 C cellular_component
2560 O_BomoMSG12304_complete:A_BomoMSG_c23725_g1_i2
403bp
 mRNA-decapping_enzyme_1B_isoform_X2_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0008047 F enzyme activator activity
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030234 F enzyme regulator activity
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0042802 F identical protein binding
GO:0043085 P positive regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:1903608 P protein localization to cytoplasmic stress granule
2561 O_BomoMSG12305_complete:A_BomoMSG_c23725_g1_i3
429bp
 mRNA-decapping_enzyme_1B_isoform_X1_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0008047 F enzyme activator activity
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030234 F enzyme regulator activity
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0042802 F identical protein binding
GO:0043085 P positive regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:1903608 P protein localization to cytoplasmic stress granule
2562 O_BomoMSG12306_internal:A_BomoMSG_c23726_g1_i1
411bp
 protein_ELYS_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000785 C chromatin
GO:0000910 P cytokinesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0015031 P protein transport
GO:0016363 C nuclear matrix
GO:0030097 P hemopoiesis
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0051301 P cell division
GO:0070062 C extracellular exosome
2563 O_BomoMSG12307_5prime_partial:A_BomoMSG_c23726_g1_i1
103bp
2564 O_BomoMSG12308_internal:A_BomoMSG_c23726_g1_i2
520bp
 protein_ELYS_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000785 C chromatin
GO:0000910 P cytokinesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0015031 P protein transport
GO:0016363 C nuclear matrix
GO:0030097 P hemopoiesis
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0051301 P cell division
GO:0070062 C extracellular exosome
2565 O_BomoMSG12309_5prime_partial:A_BomoMSG_c23726_g1_i2
103bp
2566 O_BomoMSG1230_internal:A_BomoMSG_c5580_g1_i1
133bp
2567 O_BomoMSG12310_complete:A_BomoMSG_c23727_g1_i1
241bp
 zinc_finger_protein_665_isoform_X2_[Bombyx_mori]
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0016363 C nuclear matrix
GO:0030097 P hemopoiesis
GO:0030854 P positive regulation of granulocyte differentiation
GO:0045646 P regulation of erythrocyte differentiation
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051574 P positive regulation of histone H3-K9 methylation
2568 O_BomoMSG12311_3prime_partial:A_BomoMSG_c23727_g1_i2
279bp
 zinc_finger_protein_665_isoform_X1_[Bombyx_mori]
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0016363 C nuclear matrix
GO:0030097 P hemopoiesis
GO:0030854 P positive regulation of granulocyte differentiation
GO:0045646 P regulation of erythrocyte differentiation
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051574 P positive regulation of histone H3-K9 methylation
2569 O_BomoMSG12312_internal:A_BomoMSG_c23727_g1_i3
216bp
 zinc_finger_protein_665_isoform_X1_[Bombyx_mori]
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0016363 C nuclear matrix
GO:0030097 P hemopoiesis
GO:0030854 P positive regulation of granulocyte differentiation
GO:0045646 P regulation of erythrocyte differentiation
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051574 P positive regulation of histone H3-K9 methylation
2570 O_BomoMSG12313_3prime_partial:A_BomoMSG_c23728_g1_i1
267bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
2571 O_BomoMSG12314_3prime_partial:A_BomoMSG_c23728_g1_i2
267bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
2572 O_BomoMSG12315_3prime_partial:A_BomoMSG_c23729_g1_i1
313bp
 G_patch_domain-containing_protein_4_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003676 F nucleic acid binding
2573 O_BomoMSG12316_internal:A_BomoMSG_c23729_g1_i2
188bp
 G_patch_domain-containing_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
2574 O_BomoMSG12317_3prime_partial:A_BomoMSG_c23731_g1_i1
273bp
 tRNA_(guanine-N(7)-)-methyltransferase_non-catalytic_subunit_wuho_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 P tRNA methylation
GO:0036265 P RNA (guanine-N7)-methylation
2575 O_BomoMSG12318_complete:A_BomoMSG_c23732_g1_i1
139bp
2576 O_BomoMSG12319_complete:A_BomoMSG_c23732_g1_i2
139bp
2577 O_BomoMSG1231_internal:A_BomoMSG_c5580_g2_i1
117bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR3_[Amyelois_transitella]
GO:0000151 C ubiquitin ligase complex
GO:0001701 P in utero embryonic development
GO:0001967 P suckling behavior
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007608 P sensory perception of smell
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042048 P olfactory behavior
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
2578 O_BomoMSG12320_complete:A_BomoMSG_c23732_g1_i3
139bp
2579 O_BomoMSG12321_internal:A_BomoMSG_c23733_g1_i1
331bp
 tyrosine-protein_phosphatase_non-receptor_type_4_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0008092 F cytoskeletal protein binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
2580 O_BomoMSG12322_internal:A_BomoMSG_c23733_g1_i2
112bp
 tyrosine-protein_phosphatase_non-receptor_type_4_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0008092 F cytoskeletal protein binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
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