SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2491 O_BomoMSG12242_complete:A_BomoMSG_c23694_g1_i1
158bp
2492 O_BomoMSG12243_complete:A_BomoMSG_c23694_g1_i1
145bp
2493 O_BomoMSG12244_complete:A_BomoMSG_c23694_g1_i2
1970bp
 chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
2494 O_BomoMSG12245_3prime_partial:A_BomoMSG_c23694_g1_i2
161bp
2495 O_BomoMSG12246_complete:A_BomoMSG_c23694_g1_i2
158bp
2496 O_BomoMSG12247_complete:A_BomoMSG_c23694_g1_i2
145bp
2497 O_BomoMSG12248_complete:A_BomoMSG_c23694_g1_i2
131bp
2498 O_BomoMSG12249_complete:A_BomoMSG_c23694_g1_i2
111bp
2499 O_BomoMSG1224_5prime_partial:A_BomoMSG_c5573_g1_i1
126bp
 histone_deacetylase_6_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000209 P protein polyubiquitination
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003779 F actin binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005771 C multivesicular body
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005881 C cytoplasmic microtubule
GO:0005901 C caveola
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0006996 P organelle organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0008013 F beta-catenin binding
GO:0008017 F microtubule binding
GO:0008270 F zinc ion binding
GO:0009636 P response to toxic substance
GO:0009967 P positive regulation of signal transduction
GO:0010033 P response to organic substance
GO:0010469 P regulation of signaling receptor activity
GO:0010506 P regulation of autophagy
GO:0010634 P positive regulation of epithelial cell migration
GO:0010727 P negative regulation of hydrogen peroxide metabolic process
GO:0010870 P obsolete positive regulation of receptor biosynthetic process
GO:0016234 C inclusion body
GO:0016235 C aggresome
GO:0016236 P macroautophagy
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0019899 F enzyme binding
GO:0030286 C dynein complex
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031252 C cell leading edge
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032418 P lysosome localization
GO:0034983 P peptidyl-lysine deacetylation
GO:0035967 P cellular response to topologically incorrect protein
GO:0040029 P regulation of gene expression, epigenetic
GO:0042826 F histone deacetylase binding
GO:0042903 F tubulin deacetylase activity
GO:0042995 C cell projection
GO:0043014 F alpha-tubulin binding
GO:0043130 F ubiquitin binding
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043204 C perikaryon
GO:0043234 C protein-containing complex
GO:0043241 P protein-containing complex disassembly
GO:0043242 P negative regulation of protein-containing complex disassembly
GO:0045598 P regulation of fat cell differentiation
GO:0045861 P negative regulation of proteolysis
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048156 F tau protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0051354 P negative regulation of oxidoreductase activity
GO:0051646 P mitochondrion localization
GO:0051787 F misfolded protein binding
GO:0051788 P response to misfolded protein
GO:0051879 F Hsp90 protein binding
GO:0060632 P regulation of microtubule-based movement
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070201 P regulation of establishment of protein localization
GO:0070301 P cellular response to hydrogen peroxide
GO:0070840 F dynein complex binding
GO:0070842 P aggresome assembly
GO:0070845 P polyubiquitinated misfolded protein transport
GO:0070846 P Hsp90 deacetylation
GO:0070848 P response to growth factor
GO:0070932 P histone H3 deacetylation
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:0090042 P tubulin deacetylation
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1901300 P positive regulation of hydrogen peroxide-mediated programmed cell death
GO:1903146 P regulation of autophagy of mitochondrion
2500 O_BomoMSG12250_complete:A_BomoMSG_c23694_g1_i3
1970bp
 chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
2501 O_BomoMSG12251_3prime_partial:A_BomoMSG_c23694_g1_i3
161bp
2502 O_BomoMSG12252_complete:A_BomoMSG_c23694_g1_i3
158bp
2503 O_BomoMSG12253_complete:A_BomoMSG_c23694_g1_i3
145bp
2504 O_BomoMSG12254_complete:A_BomoMSG_c23694_g1_i3
131bp
2505 O_BomoMSG12255_complete:A_BomoMSG_c23694_g1_i3
111bp
2506 O_BomoMSG12256_5prime_partial:A_BomoMSG_c23694_g1_i4
1255bp
 chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
2507 O_BomoMSG12257_complete:A_BomoMSG_c23694_g1_i4
158bp
2508 O_BomoMSG12258_complete:A_BomoMSG_c23694_g1_i4
145bp
2509 O_BomoMSG12259_complete:A_BomoMSG_c23694_g1_i4
111bp
2510 O_BomoMSG1225_internal:A_BomoMSG_c5575_g1_i1
164bp
 oocyte_zinc_finger_protein_XlCOF6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2511 O_BomoMSG12260_internal:A_BomoMSG_c23695_g1_i1
374bp
 FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007416 P synapse assembly
GO:0008092 F cytoskeletal protein binding
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0030425 C dendrite
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043197 C dendritic spine
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048365 F small GTPase binding
GO:0048813 P dendrite morphogenesis
2512 O_BomoMSG12261_5prime_partial:A_BomoMSG_c23695_g1_i1
187bp
2513 O_BomoMSG12262_internal:A_BomoMSG_c23695_g1_i2
199bp
 FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007155 P cell adhesion
GO:0008092 F cytoskeletal protein binding
GO:0016322 P neuron remodeling
GO:0016601 P Rac protein signal transduction
GO:0019898 C extrinsic component of membrane
GO:0030316 P osteoclast differentiation
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0033623 P regulation of integrin activation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071800 P podosome assembly
2514 O_BomoMSG12263_5prime_partial:A_BomoMSG_c23695_g1_i2
187bp
2515 O_BomoMSG12264_internal:A_BomoMSG_c23695_g1_i3
225bp
 FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007155 P cell adhesion
GO:0008092 F cytoskeletal protein binding
GO:0016322 P neuron remodeling
GO:0016601 P Rac protein signal transduction
GO:0019898 C extrinsic component of membrane
GO:0030316 P osteoclast differentiation
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0033623 P regulation of integrin activation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071800 P podosome assembly
2516 O_BomoMSG12265_5prime_partial:A_BomoMSG_c23695_g1_i3
187bp
2517 O_BomoMSG12266_3prime_partial:A_BomoMSG_c23698_g1_i1
365bp
 rabenosyn-5_[Bombyx_mori]
GO:0000011 P vacuole inheritance
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006895 P Golgi to endosome transport
GO:0006896 P Golgi to vacuole transport
GO:0006897 P endocytosis
GO:0010009 C cytoplasmic side of endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0031901 C early endosome membrane
GO:0034058 P endosomal vesicle fusion
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
2518 O_BomoMSG12267_complete:A_BomoMSG_c23700_g1_i1
488bp
 methyltransferase-like_protein_25_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
2519 O_BomoMSG12268_complete:A_BomoMSG_c23700_g1_i1
138bp
 protein_ORAOV1_homolog_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042273 P ribosomal large subunit biogenesis
2520 O_BomoMSG12269_5prime_partial:A_BomoMSG_c23701_g1_i2
361bp
 WASH_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0015031 P protein transport
GO:0016197 P endosomal transport
GO:0031083 C BLOC-1 complex
GO:0071203 C WASH complex
previous next from show/29137

- SilkBase 1999-2023 -