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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2461 O_BomoMSG12215_complete:A_BomoMSG_c23680_g2_i2
122bp
2462 O_BomoMSG12216_3prime_partial:A_BomoMSG_c23680_g2_i2
99bp
2463 O_BomoMSG12217_internal:A_BomoMSG_c23681_g1_i1
323bp
 integrator_complex_subunit_6_[Bombyx_mori]
GO:0005634 C nucleus
2464 O_BomoMSG12218_3prime_partial:A_BomoMSG_c23681_g1_i2
683bp
 integrator_complex_subunit_6_[Bombyx_mori]
GO:0005634 C nucleus
2465 O_BomoMSG12219_internal:A_BomoMSG_c23681_g1_i3
200bp
 integrator_complex_subunit_6_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008150 P biological_process
2466 O_BomoMSG1221_internal:A_BomoMSG_c5561_g1_i1
100bp
 PREDICTED:_uncharacterized_protein_LOC105386279_[Plutella_xylostella]
2467 O_BomoMSG12220_5prime_partial:A_BomoMSG_c23683_g1_i1
450bp
 bestrophin-4_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0030321 P transepithelial chloride transport
GO:0034707 C chloride channel complex
GO:0050908 P detection of light stimulus involved in visual perception
GO:0051924 P regulation of calcium ion transport
GO:1902476 P chloride transmembrane transport
2468 O_BomoMSG12221_complete:A_BomoMSG_c23683_g1_i2
668bp
 bestrophin-4_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0015698 P inorganic anion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0043271 P negative regulation of ion transport
GO:1902476 P chloride transmembrane transport
2469 O_BomoMSG12222_3prime_partial:A_BomoMSG_c23685_g1_i1
176bp
 LIM_and_SH3_domain_protein_Lasp_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007291 P sperm individualization
GO:0008270 F zinc ion binding
GO:0014881 P regulation of myofibril size
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0031672 C A band
GO:0045214 P sarcomere organization
GO:0045856 P positive regulation of pole plasm oskar mRNA localization
GO:0046872 F metal ion binding
GO:0070864 C sperm individualization complex
GO:0071689 P muscle thin filament assembly
2470 O_BomoMSG12223_3prime_partial:A_BomoMSG_c23685_g1_i2
234bp
 LIM_and_SH3_domain_protein_Lasp_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007291 P sperm individualization
GO:0008270 F zinc ion binding
GO:0014881 P regulation of myofibril size
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0031672 C A band
GO:0045214 P sarcomere organization
GO:0045856 P positive regulation of pole plasm oskar mRNA localization
GO:0046872 F metal ion binding
GO:0070864 C sperm individualization complex
GO:0071689 P muscle thin filament assembly
2471 O_BomoMSG12224_complete:A_BomoMSG_c23685_g1_i3
247bp
 PREDICTED:_LIM_and_SH3_domain_protein_Lasp_isoform_X4_[Papilio_polytes]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007291 P sperm individualization
GO:0008270 F zinc ion binding
GO:0014881 P regulation of myofibril size
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0031672 C A band
GO:0045214 P sarcomere organization
GO:0045856 P positive regulation of pole plasm oskar mRNA localization
GO:0046872 F metal ion binding
GO:0070864 C sperm individualization complex
GO:0071689 P muscle thin filament assembly
2472 O_BomoMSG12225_5prime_partial:A_BomoMSG_c23685_g1_i4
168bp
 LIM_and_SH3_domain_protein_Lasp_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007291 P sperm individualization
GO:0008270 F zinc ion binding
GO:0014881 P regulation of myofibril size
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0031672 C A band
GO:0045214 P sarcomere organization
GO:0045856 P positive regulation of pole plasm oskar mRNA localization
GO:0046872 F metal ion binding
GO:0070864 C sperm individualization complex
GO:0071689 P muscle thin filament assembly
2473 O_BomoMSG12226_complete:A_BomoMSG_c23686_g1_i1
431bp
 minichromosome_maintenance_complex_component_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
2474 O_BomoMSG12227_complete:A_BomoMSG_c23686_g1_i1
245bp
2475 O_BomoMSG12228_complete:A_BomoMSG_c23686_g1_i1
161bp
 minichromosome_maintenance_complex_component_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
2476 O_BomoMSG12229_complete:A_BomoMSG_c23687_g1_i1
646bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X1_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007568 P aging
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0010226 P response to lithium ion
GO:0014002 P astrocyte development
GO:0014003 P oligodendrocyte development
GO:0021766 P hippocampus development
GO:0031369 F translation initiation factor binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042552 P myelination
GO:0043065 P positive regulation of apoptotic process
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0045727 P positive regulation of translation
GO:0045948 P positive regulation of translational initiation
GO:0048708 P astrocyte differentiation
2477 O_BomoMSG1222_complete:A_BomoMSG_c5567_g1_i1
245bp
 ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
2478 O_BomoMSG12230_5prime_partial:A_BomoMSG_c23687_g1_i2
393bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X1_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007568 P aging
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0010226 P response to lithium ion
GO:0014002 P astrocyte development
GO:0014003 P oligodendrocyte development
GO:0021766 P hippocampus development
GO:0031369 F translation initiation factor binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042552 P myelination
GO:0043065 P positive regulation of apoptotic process
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0045727 P positive regulation of translation
GO:0045948 P positive regulation of translational initiation
GO:0048708 P astrocyte differentiation
2479 O_BomoMSG12231_internal:A_BomoMSG_c23688_g1_i1
318bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
2480 O_BomoMSG12232_complete:A_BomoMSG_c23688_g1_i1
126bp
2481 O_BomoMSG12233_internal:A_BomoMSG_c23689_g1_i1
104bp
 leucine-rich_repeat-containing_protein_1_[Bombyx_mori]
2482 O_BomoMSG12234_internal:A_BomoMSG_c23689_g1_i3
553bp
 protein_lap1_[Helicoverpa_armigera]
GO:0005102 F signaling receptor binding
GO:0005176 F ErbB-2 class receptor binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005604 C basement membrane
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006605 P protein targeting
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0031965 C nuclear membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032495 P response to muramyl dipeptide
GO:0032496 P response to lipopolysaccharide
GO:0038128 P ERBB2 signaling pathway
GO:0045104 P intermediate filament cytoskeleton organization
GO:0045175 P basal protein localization
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0070433 P negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway
GO:0071356 P cellular response to tumor necrosis factor
GO:0071638 P negative regulation of monocyte chemotactic protein-1 production
2483 O_BomoMSG12235_3prime_partial:A_BomoMSG_c23690_g1_i1
504bp
 cationic_amino_acid_transporter_2_isoform_X1_[Bombyx_mori]
GO:0000064 F L-ornithine transmembrane transporter activity
GO:0002537 P nitric oxide production involved in inflammatory response
GO:0003333 P amino acid transmembrane transport
GO:0005289 F high-affinity L-arginine transmembrane transporter activity
GO:0005292 F high-affinity lysine transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006809 P nitric oxide biosynthetic process
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015179 F L-amino acid transmembrane transporter activity
GO:0015181 F L-arginine transmembrane transporter activity
GO:0015189 F L-lysine transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015809 P L-arginine transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042116 P macrophage activation
GO:0043030 P regulation of macrophage activation
GO:0050727 P regulation of inflammatory response
GO:0061459 F L-arginine transmembrane transporter activity
GO:0097626 F low-affinity L-arginine transmembrane transporter activity
GO:0097627 F high-affinity L-ornithine transmembrane transporter activity
GO:0097638 P L-arginine import across plasma membrane
GO:0097639 P L-lysine import across plasma membrane
GO:0097640 P L-ornithine import across plasma membrane
GO:1902023 P L-arginine transmembrane transport
GO:1903352 P L-ornithine transmembrane transport
2484 O_BomoMSG12236_complete:A_BomoMSG_c23690_g1_i1
211bp
2485 O_BomoMSG12237_complete:A_BomoMSG_c23690_g1_i1
130bp
2486 O_BomoMSG12238_3prime_partial:A_BomoMSG_c23693_g1_i1
276bp
 lysine-specific_demethylase_8_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0003674 F molecular_function
GO:0003682 F chromatin binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008150 P biological_process
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
2487 O_BomoMSG12239_3prime_partial:A_BomoMSG_c23693_g1_i2
178bp
 lysine-specific_demethylase_8_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0003674 F molecular_function
GO:0003682 F chromatin binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008150 P biological_process
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
2488 O_BomoMSG1223_internal:A_BomoMSG_c5573_g1_i1
137bp
2489 O_BomoMSG12240_internal:A_BomoMSG_c23693_g1_i3
153bp
 lysine-specific_demethylase_8_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0003674 F molecular_function
GO:0003682 F chromatin binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008150 P biological_process
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
2490 O_BomoMSG12241_5prime_partial:A_BomoMSG_c23694_g1_i1
466bp
 chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
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