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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2431 O_BomoMSG12189_3prime_partial:A_BomoMSG_c23670_g1_i1
418bp
 5-hydroxytryptamine_receptor_1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0004952 F dopamine neurotransmitter receptor activity
GO:0004993 F G protein-coupled serotonin receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007192 P adenylate cyclase-activating serotonin receptor signaling pathway
GO:0007210 P serotonin receptor signaling pathway
GO:0007212 P dopamine receptor signaling pathway
GO:0007619 P courtship behavior
GO:0008227 F G protein-coupled amine receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016543 P male courtship behavior, orientation prior to leg tapping and wing vibration
GO:0016545 P male courtship behavior, veined wing vibration
GO:0016546 P male courtship behavior, proboscis-mediated licking
GO:0060179 P male mating behavior
GO:0060180 P female mating behavior
2432 O_BomoMSG1218_complete:A_BomoMSG_c5548_g1_i1
109bp
 FK506-binding_protein_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
2433 O_BomoMSG12190_3prime_partial:A_BomoMSG_c23670_g1_i2
418bp
 5-hydroxytryptamine_receptor_1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0004952 F dopamine neurotransmitter receptor activity
GO:0004993 F G protein-coupled serotonin receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007192 P adenylate cyclase-activating serotonin receptor signaling pathway
GO:0007210 P serotonin receptor signaling pathway
GO:0007212 P dopamine receptor signaling pathway
GO:0007619 P courtship behavior
GO:0008227 F G protein-coupled amine receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016543 P male courtship behavior, orientation prior to leg tapping and wing vibration
GO:0016545 P male courtship behavior, veined wing vibration
GO:0016546 P male courtship behavior, proboscis-mediated licking
GO:0060179 P male mating behavior
GO:0060180 P female mating behavior
2434 O_BomoMSG12191_complete:A_BomoMSG_c23671_g1_i1
185bp
 peptidyl-prolyl_cis-trans_isomerase_H_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0006461 P protein-containing complex assembly
GO:0008380 P RNA splicing
GO:0016018 F cyclosporin A binding
GO:0016607 C nuclear speck
GO:0016853 F isomerase activity
GO:0043021 F ribonucleoprotein complex binding
GO:0045070 P positive regulation of viral genome replication
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071001 C U4/U6 snRNP
2435 O_BomoMSG12192_3prime_partial:A_BomoMSG_c23672_g1_i1
537bp
 DNA_ligase_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
2436 O_BomoMSG12193_5prime_partial:A_BomoMSG_c23672_g1_i1
139bp
2437 O_BomoMSG12194_complete:A_BomoMSG_c23672_g1_i3
419bp
 DNA_ligase_4_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0000793 C condensed chromosome
GO:0001701 P in utero embryonic development
GO:0002328 P pro-B cell differentiation
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007417 P central nervous system development
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0010165 P response to X-ray
GO:0010212 P response to ionizing radiation
GO:0010332 P response to gamma radiation
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033077 P T cell differentiation in thymus
GO:0033151 P V(D)J recombination
GO:0033152 P immunoglobulin V(D)J recombination
GO:0033153 P T cell receptor V(D)J recombination
GO:0035019 P somatic stem cell population maintenance
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045190 P isotype switching
GO:0046872 F metal ion binding
GO:0048146 P positive regulation of fibroblast proliferation
GO:0050769 P positive regulation of neurogenesis
GO:0051102 P DNA ligation involved in DNA recombination
GO:0051103 P DNA ligation involved in DNA repair
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051402 P neuron apoptotic process
GO:0070419 C nonhomologous end joining complex
GO:0071285 P cellular response to lithium ion
GO:0071897 P DNA biosynthetic process
GO:0097680 P double-strand break repair via classical nonhomologous end joining
GO:2001252 P positive regulation of chromosome organization
2438 O_BomoMSG12195_complete:A_BomoMSG_c23673_g1_i1
143bp
 thioredoxin,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000103 P sulfate assimilation
GO:0001666 P response to hypoxia
GO:0005515 F protein binding
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0006662 P glycerol ether metabolic process
GO:0006979 P response to oxidative stress
GO:0007584 P response to nutrient
GO:0008113 F peptide-methionine (S)-S-oxide reductase activity
GO:0009725 P response to hormone
GO:0009749 P response to glucose
GO:0014070 P response to organic cyclic compound
GO:0015035 F protein-disulfide reductase activity
GO:0030425 C dendrite
GO:0031669 P cellular response to nutrient levels
GO:0032403 F protein-containing complex binding
GO:0033743 F peptide-methionine (R)-S-oxide reductase activity
GO:0034599 P cellular response to oxidative stress
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0045454 P cell redox homeostasis
GO:0048678 P response to axon injury
GO:0055114 P obsolete oxidation-reduction process
2439 O_BomoMSG12196_complete:A_BomoMSG_c23673_g1_i2
143bp
 thioredoxin,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000103 P sulfate assimilation
GO:0001666 P response to hypoxia
GO:0005515 F protein binding
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0006662 P glycerol ether metabolic process
GO:0006979 P response to oxidative stress
GO:0007584 P response to nutrient
GO:0008113 F peptide-methionine (S)-S-oxide reductase activity
GO:0009725 P response to hormone
GO:0009749 P response to glucose
GO:0014070 P response to organic cyclic compound
GO:0015035 F protein-disulfide reductase activity
GO:0030425 C dendrite
GO:0031669 P cellular response to nutrient levels
GO:0032403 F protein-containing complex binding
GO:0033743 F peptide-methionine (R)-S-oxide reductase activity
GO:0034599 P cellular response to oxidative stress
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0045454 P cell redox homeostasis
GO:0048678 P response to axon injury
GO:0055114 P obsolete oxidation-reduction process
2440 O_BomoMSG12197_complete:A_BomoMSG_c23673_g1_i2
108bp
 PREDICTED:_thioredoxin,_mitochondrial-like_isoform_X2_[Amyelois_transitella]
2441 O_BomoMSG12198_complete:A_BomoMSG_c23675_g1_i1
222bp
 uncharacterized_protein_LOC101740081_[Bombyx_mori]
2442 O_BomoMSG12199_complete:A_BomoMSG_c23675_g1_i1
139bp
2443 O_BomoMSG1219_3prime_partial:A_BomoMSG_c5550_g1_i1
164bp
 CCR4-NOT_transcription_complex_subunit_6_isoform_X1_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008284 P positive regulation of cell population proliferation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0035195 P gene silencing by miRNA
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 P obsolete positive regulation of nuclear receptor transcription coactivator activity
2444 O_BomoMSG121_internal:A_BomoMSG_c429_g1_i1
107bp
 actin_cytoskeleton-regulatory_complex_protein_pan-1-like_[Bombyx_mori]
2445 O_BomoMSG12200_5prime_partial:A_BomoMSG_c23676_g1_i1
236bp
 exocyst_complex_component_8_[Bombyx_mori]
GO:0000145 C exocyst
GO:0001927 P exocyst assembly
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007032 P endosome organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0022617 P extracellular matrix disassembly
GO:0030426 C growth cone
GO:0034613 P cellular protein localization
GO:0042995 C cell projection
GO:0048471 C perinuclear region of cytoplasm
GO:0051601 P exocyst localization
2446 O_BomoMSG12201_complete:A_BomoMSG_c23676_g1_i2
410bp
 exocyst_complex_component_8_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
2447 O_BomoMSG12202_complete:A_BomoMSG_c23677_g1_i1
528bp
 U3_small_nucleolar_RNA-associated_protein_15_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0030054 C cell junction
GO:0044822 F RNA binding
2448 O_BomoMSG12203_complete:A_BomoMSG_c23677_g1_i1
151bp
2449 O_BomoMSG12204_3prime_partial:A_BomoMSG_c23679_g1_i1
256bp
 protein_mini_spindles_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
2450 O_BomoMSG12205_internal:A_BomoMSG_c23679_g1_i3
137bp
 protein_mini_spindles_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
2451 O_BomoMSG12206_5prime_partial:A_BomoMSG_c23679_g1_i3
114bp
2452 O_BomoMSG12207_internal:A_BomoMSG_c23680_g1_i1
207bp
 probable_phospholipid-transporting_ATPase_IA_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007612 P learning
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030335 P positive regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
GO:0061092 P positive regulation of phospholipid translocation
GO:0070062 C extracellular exosome
2453 O_BomoMSG12208_internal:A_BomoMSG_c23680_g1_i1
207bp
2454 O_BomoMSG12209_5prime_partial:A_BomoMSG_c23680_g1_i1
146bp
2455 O_BomoMSG1220_3prime_partial:A_BomoMSG_c5559_g1_i1
111bp
 uncharacterized_protein_LOC101736839_isoform_X1_[Bombyx_mori]
2456 O_BomoMSG12210_5prime_partial:A_BomoMSG_c23680_g2_i1
213bp
 probable_phospholipid-transporting_ATPase_IA_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
2457 O_BomoMSG12211_5prime_partial:A_BomoMSG_c23680_g2_i1
135bp
2458 O_BomoMSG12212_complete:A_BomoMSG_c23680_g2_i1
122bp
2459 O_BomoMSG12213_5prime_partial:A_BomoMSG_c23680_g2_i2
386bp
 probable_phospholipid-transporting_ATPase_IA_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007612 P learning
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0030335 P positive regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0042584 C chromaffin granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
GO:0061092 P positive regulation of phospholipid translocation
GO:0070062 C extracellular exosome
GO:0098655 P cation transmembrane transport
2460 O_BomoMSG12214_5prime_partial:A_BomoMSG_c23680_g2_i2
308bp
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