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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2401 O_BomoMSG12161_complete:A_BomoMSG_c23650_g1_i1
405bp
 mannose-6-phosphate_isomerase_[Bombyx_mori]
GO:0004476 F mannose-6-phosphate isomerase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0008270 F zinc ion binding
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:0061611 P mannose to fructose-6-phosphate metabolic process
GO:0070062 C extracellular exosome
2402 O_BomoMSG12162_5prime_partial:A_BomoMSG_c23650_g1_i2
308bp
 mannose-6-phosphate_isomerase_[Bombyx_mori]
GO:0004476 F mannose-6-phosphate isomerase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0008270 F zinc ion binding
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2403 O_BomoMSG12163_internal:A_BomoMSG_c23651_g1_i1
263bp
 sporulation-specific_protein_15_isoform_X2_[Bombyx_mori]
2404 O_BomoMSG12164_internal:A_BomoMSG_c23652_g1_i2
344bp
 uncharacterized_protein_LOC110378129_isoform_X2_[Helicoverpa_armigera]
2405 O_BomoMSG12165_3prime_partial:A_BomoMSG_c23652_g1_i3
447bp
 uncharacterized_protein_LOC110378129_isoform_X2_[Helicoverpa_armigera]
2406 O_BomoMSG12166_complete:A_BomoMSG_c23656_g2_i1
214bp
 NF-kappa-B_inhibitor-interacting_Ras-like_protein_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
2407 O_BomoMSG12167_complete:A_BomoMSG_c23656_g2_i1
124bp
2408 O_BomoMSG12168_complete:A_BomoMSG_c23656_g2_i2
218bp
 NF-kappa-B_inhibitor-interacting_Ras-like_protein_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
2409 O_BomoMSG12169_complete:A_BomoMSG_c23656_g2_i2
124bp
2410 O_BomoMSG1216_complete:A_BomoMSG_c5544_g1_i1
181bp
 ADP-ribosylation_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0003956 F NAD(P)+-protein-arginine ADP-ribosyltransferase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006471 P protein ADP-ribosylation
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0007269 P neurotransmitter secretion
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0048488 P synaptic vesicle endocytosis
GO:0048749 P compound eye development
GO:0098793 C presynapse
2411 O_BomoMSG12170_internal:A_BomoMSG_c23657_g1_i1
247bp
 rab_GTPase-binding_effector_protein_1_isoform_X3_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0008083 F growth factor activity
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030139 C endocytic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0055037 C recycling endosome
GO:0061025 P membrane fusion
2412 O_BomoMSG12171_5prime_partial:A_BomoMSG_c23657_g1_i1
207bp
2413 O_BomoMSG12172_5prime_partial:A_BomoMSG_c23657_g1_i1
118bp
2414 O_BomoMSG12173_3prime_partial:A_BomoMSG_c23658_g1_i1
503bp
 uncharacterized_protein_LOC101742999_[Bombyx_mori]
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007599 P hemostasis
GO:0007611 P learning or memory
GO:0007626 P locomotory behavior
GO:0008270 F zinc ion binding
GO:0008298 P intracellular mRNA localization
GO:0010609 P mRNA localization resulting in posttranscriptional regulation of gene expression
GO:0030220 P platelet formation
GO:0030425 C dendrite
GO:0035855 P megakaryocyte development
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:0045600 P positive regulation of fat cell differentiation
GO:0046872 F metal ion binding
GO:0070889 P platelet alpha granule organization
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1902164 P positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2000765 P regulation of cytoplasmic translation
2415 O_BomoMSG12174_internal:A_BomoMSG_c23658_g1_i2
233bp
 uncharacterized_protein_LOC101742999_[Bombyx_mori]
2416 O_BomoMSG12175_3prime_partial:A_BomoMSG_c23659_g1_i1
186bp
 uncharacterized_protein_LOC101742089_[Bombyx_mori]
2417 O_BomoMSG12176_5prime_partial:A_BomoMSG_c23659_g1_i1
182bp
2418 O_BomoMSG12177_3prime_partial:A_BomoMSG_c23659_g1_i3
217bp
 uncharacterized_protein_LOC101742089_[Bombyx_mori]
2419 O_BomoMSG12178_5prime_partial:A_BomoMSG_c23659_g1_i3
182bp
2420 O_BomoMSG12179_5prime_partial:A_BomoMSG_c23662_g1_i2
110bp
 RNA_polymerase_II-associated_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2421 O_BomoMSG1217_complete:A_BomoMSG_c5545_g1_i1
179bp
 39S_ribosomal_protein_L30,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2422 O_BomoMSG12180_5prime_partial:A_BomoMSG_c23662_g1_i3
377bp
 RNA_polymerase_II-associated_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2423 O_BomoMSG12181_5prime_partial:A_BomoMSG_c23665_g1_i2
309bp
 stearoyl-CoA_desaturase_5_[Bombyx_mori]
GO:0004768 F stearoyl-CoA 9-desaturase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006636 P unsaturated fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016717 F oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
2424 O_BomoMSG12182_complete:A_BomoMSG_c23667_g1_i2
174bp
 protein_cereblon-like_[Bombyx_mori]
GO:0046872 F metal ion binding
2425 O_BomoMSG12183_complete:A_BomoMSG_c23667_g1_i3
174bp
 protein_cereblon-like_[Bombyx_mori]
GO:0046872 F metal ion binding
2426 O_BomoMSG12184_complete:A_BomoMSG_c23669_g1_i1
673bp
 protein_arginine_N-methyltransferase_5_isoform_X3_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007088 P regulation of mitotic nuclear division
GO:0008168 F methyltransferase activity
GO:0008283 P cell population proliferation
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032403 F protein-containing complex binding
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035097 C histone methyltransferase complex
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0044030 P regulation of DNA methylation
GO:0045596 P negative regulation of cell differentiation
GO:0046982 F protein heterodimerization activity
GO:0048511 P rhythmic process
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0070372 P regulation of ERK1 and ERK2 cascade
GO:0090161 P Golgi ribbon formation
GO:0097421 P liver regeneration
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1903507 P negative regulation of nucleic acid-templated transcription
GO:1904992 P positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway
2427 O_BomoMSG12185_complete:A_BomoMSG_c23669_g1_i1
150bp
2428 O_BomoMSG12186_5prime_partial:A_BomoMSG_c23669_g1_i2
248bp
 protein_arginine_N-methyltransferase_5_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035097 C histone methyltransferase complex
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043021 F ribonucleoprotein complex binding
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0046982 F protein heterodimerization activity
GO:0048511 P rhythmic process
GO:0090161 P Golgi ribbon formation
GO:1904992 P positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway
2429 O_BomoMSG12187_complete:A_BomoMSG_c23669_g1_i3
687bp
 protein_arginine_N-methyltransferase_5_isoform_X1_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007088 P regulation of mitotic nuclear division
GO:0008168 F methyltransferase activity
GO:0008283 P cell population proliferation
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032403 F protein-containing complex binding
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035097 C histone methyltransferase complex
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0044030 P regulation of DNA methylation
GO:0045596 P negative regulation of cell differentiation
GO:0046982 F protein heterodimerization activity
GO:0048511 P rhythmic process
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0070372 P regulation of ERK1 and ERK2 cascade
GO:0090161 P Golgi ribbon formation
GO:0097421 P liver regeneration
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1903507 P negative regulation of nucleic acid-templated transcription
GO:1904992 P positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway
2430 O_BomoMSG12188_complete:A_BomoMSG_c23669_g1_i3
150bp
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