SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2281 O_BomoMSG12053_3prime_partial:A_BomoMSG_c23602_g1_i2
152bp
 cyclin-dependent_kinase_14,_partial_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
2282 O_BomoMSG12054_5prime_partial:A_BomoMSG_c23602_g1_i2
101bp
 cyclin-dependent_kinase_14,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006887 P exocytosis
GO:0007283 P spermatogenesis
GO:0008021 C synaptic vesicle
GO:0015630 C microtubule cytoskeleton
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030054 C cell junction
GO:0030133 C transport vesicle
GO:0030154 P cell differentiation
GO:0030252 P growth hormone secretion
GO:0031175 P neuron projection development
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0031410 C cytoplasmic vesicle
GO:0043005 C neuron projection
GO:0045202 C synapse
GO:0051726 P regulation of cell cycle
GO:0061178 P regulation of insulin secretion involved in cellular response to glucose stimulus
2283 O_BomoMSG12055_internal:A_BomoMSG_c23602_g1_i3
209bp
 cyclin-dependent_kinase_14,_partial_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
2284 O_BomoMSG12056_internal:A_BomoMSG_c23602_g1_i4
137bp
 cyclin-dependent_kinase_14,_partial_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
2285 O_BomoMSG12057_5prime_partial:A_BomoMSG_c23607_g1_i1
127bp
2286 O_BomoMSG12058_complete:A_BomoMSG_c23608_g1_i1
680bp
 aspartyl/asparaginyl_beta-hydroxylase_isoform_X7_[Bombyx_mori]
GO:0004597 F peptidyl-aspartic acid 3-dioxygenase activity
GO:0005198 F structural molecule activity
GO:0005509 F calcium ion binding
GO:0005513 P detection of calcium ion
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006936 P muscle contraction
GO:0007389 P pattern specification process
GO:0008285 P negative regulation of cell population proliferation
GO:0008307 F structural constituent of muscle
GO:0009055 F electron transfer activity
GO:0010524 P positive regulation of calcium ion transport into cytosol
GO:0010649 P regulation of cell communication by electrical coupling
GO:0010880 P regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0014701 C junctional sarcoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016529 C sarcoplasmic reticulum
GO:0018193 P peptidyl-amino acid modification
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031585 P regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031647 P regulation of protein stability
GO:0032237 P activation of store-operated calcium channel activity
GO:0032541 C cortical endoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
GO:0033018 C sarcoplasmic reticulum lumen
GO:0033198 P response to ATP
GO:0034220 P ion transmembrane transport
GO:0034704 C calcium channel complex
GO:0035108 P limb morphogenesis
GO:0042264 P peptidyl-aspartic acid hydroxylation
GO:0044325 F transmembrane transporter binding
GO:0045862 P positive regulation of proteolysis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060021 P roof of mouth development
GO:0060314 P regulation of ryanodine-sensitive calcium-release channel activity
GO:0060316 P positive regulation of ryanodine-sensitive calcium-release channel activity
GO:0060325 P face morphogenesis
GO:0070588 P calcium ion transmembrane transport
GO:0071277 P cellular response to calcium ion
GO:0090316 P positive regulation of intracellular protein transport
GO:0097202 P activation of cysteine-type endopeptidase activity
GO:1901879 P regulation of protein depolymerization
GO:1903779 P regulation of cardiac conduction
2287 O_BomoMSG12059_complete:A_BomoMSG_c23608_g1_i2
854bp
 aspartyl/asparaginyl_beta-hydroxylase_isoform_X7_[Bombyx_mori]
GO:0004597 F peptidyl-aspartic acid 3-dioxygenase activity
GO:0005198 F structural molecule activity
GO:0005509 F calcium ion binding
GO:0005513 P detection of calcium ion
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006936 P muscle contraction
GO:0007389 P pattern specification process
GO:0008285 P negative regulation of cell population proliferation
GO:0008307 F structural constituent of muscle
GO:0009055 F electron transfer activity
GO:0010524 P positive regulation of calcium ion transport into cytosol
GO:0010649 P regulation of cell communication by electrical coupling
GO:0010880 P regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0014701 C junctional sarcoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016529 C sarcoplasmic reticulum
GO:0018193 P peptidyl-amino acid modification
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031585 P regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031647 P regulation of protein stability
GO:0032237 P activation of store-operated calcium channel activity
GO:0032541 C cortical endoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
GO:0033018 C sarcoplasmic reticulum lumen
GO:0033198 P response to ATP
GO:0034220 P ion transmembrane transport
GO:0034704 C calcium channel complex
GO:0035108 P limb morphogenesis
GO:0042264 P peptidyl-aspartic acid hydroxylation
GO:0044325 F transmembrane transporter binding
GO:0045862 P positive regulation of proteolysis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060021 P roof of mouth development
GO:0060314 P regulation of ryanodine-sensitive calcium-release channel activity
GO:0060316 P positive regulation of ryanodine-sensitive calcium-release channel activity
GO:0060325 P face morphogenesis
GO:0070588 P calcium ion transmembrane transport
GO:0071277 P cellular response to calcium ion
GO:0090316 P positive regulation of intracellular protein transport
GO:0097202 P activation of cysteine-type endopeptidase activity
GO:1901879 P regulation of protein depolymerization
GO:1903779 P regulation of cardiac conduction
2288 O_BomoMSG1205_internal:A_BomoMSG_c5522_g1_i1
171bp
 uncharacterized_protein_LOC101737956_[Bombyx_mori]
2289 O_BomoMSG12060_complete:A_BomoMSG_c23608_g1_i2
142bp
 aspartyl/asparaginyl_beta-hydroxylase_isoform_X8_[Bombyx_mori]
2290 O_BomoMSG12061_complete:A_BomoMSG_c23608_g1_i3
347bp
 aspartyl/asparaginyl_beta-hydroxylase_isoform_X1_[Bombyx_mori]
GO:0004597 F peptidyl-aspartic acid 3-dioxygenase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0007389 P pattern specification process
GO:0008285 P negative regulation of cell population proliferation
GO:0010524 P positive regulation of calcium ion transport into cytosol
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016529 C sarcoplasmic reticulum
GO:0018193 P peptidyl-amino acid modification
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031585 P regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031647 P regulation of protein stability
GO:0032237 P activation of store-operated calcium channel activity
GO:0032541 C cortical endoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
GO:0033198 P response to ATP
GO:0035108 P limb morphogenesis
GO:0042264 P peptidyl-aspartic acid hydroxylation
GO:0045862 P positive regulation of proteolysis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060021 P roof of mouth development
GO:0060325 P face morphogenesis
GO:0070588 P calcium ion transmembrane transport
GO:0071277 P cellular response to calcium ion
GO:0090316 P positive regulation of intracellular protein transport
GO:0097202 P activation of cysteine-type endopeptidase activity
GO:1901879 P regulation of protein depolymerization
2291 O_BomoMSG12062_complete:A_BomoMSG_c23609_g1_i1
202bp
 transmembrane_protein_267_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2292 O_BomoMSG12063_3prime_partial:A_BomoMSG_c23611_g1_i1
172bp
 uncharacterized_protein_LOC778477_[Bombyx_mori]
2293 O_BomoMSG12064_5prime_partial:A_BomoMSG_c23612_g1_i1
252bp
 solute_carrier_family_25_member_51_[Helicoverpa_armigera]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2294 O_BomoMSG12065_complete:A_BomoMSG_c23613_g1_i1
1046bp
 transcription_elongation_factor_SPT5_[Helicoverpa_armigera]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
2295 O_BomoMSG12066_complete:A_BomoMSG_c23613_g1_i1
143bp
2296 O_BomoMSG12067_internal:A_BomoMSG_c23614_g1_i1
117bp
 uncharacterized_protein_LOC101740899_[Bombyx_mori]
2297 O_BomoMSG12068_3prime_partial:A_BomoMSG_c23614_g1_i2
229bp
 uncharacterized_protein_LOC101740899_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2298 O_BomoMSG12069_complete:A_BomoMSG_c23616_g1_i1
253bp
 PREDICTED:_tropomyosin-1,_isoforms_9A/A/B_isoform_X30_[Papilio_polytes]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
2299 O_BomoMSG1206_internal:A_BomoMSG_c5526_g1_i1
131bp
 uncharacterized_protein_LOC101744544_[Bombyx_mori]
2300 O_BomoMSG12070_complete:A_BomoMSG_c23616_g1_i2
253bp
 tropomyosin-2_isoform_3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
2301 O_BomoMSG12071_complete:A_BomoMSG_c23616_g1_i3
253bp
 tropomyosin-2_isoform_3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
2302 O_BomoMSG12072_internal:A_BomoMSG_c23616_g2_i1
303bp
 tropomyosin-2_isoform_X9_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2303 O_BomoMSG12073_complete:A_BomoMSG_c23616_g1_i4
253bp
 PREDICTED:_tropomyosin-1,_isoforms_9A/A/B_isoform_X27_[Papilio_polytes]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
2304 O_BomoMSG12074_complete:A_BomoMSG_c23616_g1_i5
114bp
 tropomyosin-2_isoform_3_[Bombyx_mori]
2305 O_BomoMSG12075_complete:A_BomoMSG_c23616_g1_i6
156bp
 Tropomyosin-1,_isoforms_9A/A/B_[Papilio_machaon]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
2306 O_BomoMSG12076_complete:A_BomoMSG_c23616_g1_i7
285bp
 PREDICTED:_tropomyosin-2_isoform_X22_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2307 O_BomoMSG12077_internal:A_BomoMSG_c23617_g1_i1
156bp
 circumsporozoite_protein_[Bombyx_mori]
2308 O_BomoMSG12078_3prime_partial:A_BomoMSG_c23617_g1_i2
180bp
 circumsporozoite_protein_[Bombyx_mori]
2309 O_BomoMSG12079_internal:A_BomoMSG_c23619_g1_i2
671bp
 DDB1-_and_CUL4-associated_factor_5_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
2310 O_BomoMSG1207_internal:A_BomoMSG_c5527_g1_i1
305bp
 serine-protein_kinase_ATM_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -