Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2311	O_BomoMSG12080_internal:A_BomoMSG_c23619_g1_i3 331bp	Bomo_Chr25	DDB1-_and_CUL4-associated_factor_5_isoform_X1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005739 C mitochondrion GO:0008150 P biological_process GO:0016567 P protein ubiquitination GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
2312	O_BomoMSG12081_internal:A_BomoMSG_c23620_g1_i1 116bp	Bomo_Chr16	N-glycosylase/DNA_lyase_[Bombyx_mori]	GO:0003684 F damaged DNA binding GO:0003824 F catalytic activity GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0004518 F nuclease activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006284 P base-excision repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0008152 P metabolic process GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0016829 F lyase activity GO:0019104 F DNA N-glycosylase activity GO:0034599 P cellular response to oxidative stress GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2313	O_BomoMSG12082_internal:A_BomoMSG_c23620_g1_i2 198bp	Bomo_Chr16	N-glycosylase/DNA_lyase_[Bombyx_mori]	GO:0003684 F damaged DNA binding GO:0003824 F catalytic activity GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0004518 F nuclease activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006284 P base-excision repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0008152 P metabolic process GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0016829 F lyase activity GO:0019104 F DNA N-glycosylase activity GO:0034599 P cellular response to oxidative stress GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2314	O_BomoMSG12083_3prime_partial:A_BomoMSG_c23620_g1_i3 128bp	Bomo_Chr16	N-glycosylase/DNA_lyase_[Bombyx_mori]	GO:0003684 F damaged DNA binding GO:0003824 F catalytic activity GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0004518 F nuclease activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006284 P base-excision repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0008152 P metabolic process GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0016829 F lyase activity GO:0019104 F DNA N-glycosylase activity GO:0034599 P cellular response to oxidative stress GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2315	O_BomoMSG12084_internal:A_BomoMSG_c23621_g1_i1 652bp	Bomo_Chr13	periodic_tryptophan_protein_2_homolog_[Bombyx_mori]	GO:0000028 P ribosomal small subunit assembly GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030515 F snoRNA binding GO:0032040 C small-subunit processome GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome GO:0044822 F RNA binding
2316	O_BomoMSG12085_complete:A_BomoMSG_c23621_g1_i1 159bp	Bomo_Chr13
2317	O_BomoMSG12086_complete:A_BomoMSG_c23621_g1_i1 107bp	Bomo_Chr13
2318	O_BomoMSG12087_3prime_partial:A_BomoMSG_c23621_g1_i2 910bp	Bomo_Chr13	periodic_tryptophan_protein_2_homolog_[Bombyx_mori]	GO:0000028 P ribosomal small subunit assembly GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030515 F snoRNA binding GO:0032040 C small-subunit processome GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome GO:0044822 F RNA binding
2319	O_BomoMSG12088_complete:A_BomoMSG_c23621_g1_i2 159bp	Bomo_Chr13
2320	O_BomoMSG12089_complete:A_BomoMSG_c23621_g1_i2 107bp	Bomo_Chr13
2321	O_BomoMSG1208_internal:A_BomoMSG_c5528_g1_i1 104bp	Bomo_Chr14	ribosomal_protein_S3,_partial_[Ostrinia_nubilalis]	GO:0003723 F RNA binding GO:0003735 F structural constituent of ribosome GO:0005840 C ribosome GO:0006412 P translation GO:0015935 C small ribosomal subunit GO:0030529 C ribonucleoprotein complex
2322	O_BomoMSG12090_complete:A_BomoMSG_c23622_g1_i1 172bp	Bomo_Chr3	tail-anchored_protein_insertion_receptor_WRB_[Bombyx_mori]	GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0007507 P heart development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0060041 P retina development in camera-type eye GO:0071816 P tail-anchored membrane protein insertion into ER membrane
2323	O_BomoMSG12091_complete:A_BomoMSG_c23622_g1_i1 113bp	Bomo_Chr3
2324	O_BomoMSG12092_internal:A_BomoMSG_c23623_g1_i1 149bp	Bomo_Chr10
2325	O_BomoMSG12093_5prime_partial:A_BomoMSG_c23623_g1_i1 118bp	Bomo_Chr10	protein_KIAA0100_[Bombyx_mori]	GO:0005576 C extracellular region
2326	O_BomoMSG12094_5prime_partial:A_BomoMSG_c23623_g1_i2 142bp	Bomo_Chr10	protein_KIAA0100_[Bombyx_mori]	GO:0005576 C extracellular region
2327	O_BomoMSG12095_5prime_partial:A_BomoMSG_c23623_g1_i3 225bp	Bomo_Chr10	protein_KIAA0100_[Bombyx_mori]	GO:0005576 C extracellular region
2328	O_BomoMSG12096_internal:A_BomoMSG_c23623_g2_i1 232bp	Bomo_Chr10
2329	O_BomoMSG12097_internal:A_BomoMSG_c23623_g2_i1 232bp	Bomo_Chr10	protein_KIAA0100_[Bombyx_mori]	GO:0005576 C extracellular region
2330	O_BomoMSG12098_internal:A_BomoMSG_c23624_g1_i1 313bp	Bomo_Chr5	zinc_transporter_2_[Bombyx_mori]	GO:0005385 F zinc ion transmembrane transporter activity GO:0005737 C cytoplasm GO:0005765 C lysosomal membrane GO:0005770 C late endosome GO:0005773 C vacuole GO:0005774 C vacuolar membrane GO:0005886 C plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006812 P cation transport GO:0006829 P zinc ion transport GO:0008324 F cation transmembrane transporter activity GO:0010043 P response to zinc ion GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016023 C cytoplasmic vesicle GO:0055085 P transmembrane transport GO:0061088 P regulation of sequestering of zinc ion GO:0061090 P positive regulation of sequestering of zinc ion GO:0071577 P zinc ion transmembrane transport
2331	O_BomoMSG12099_complete:A_BomoMSG_c23625_g1_i2 320bp	Bomo_Chr1	solute_carrier_family_35_member_B1,_partial_[synthetic_construct]	GO:0005459 F UDP-galactose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006487 P protein N-linked glycosylation GO:0006810 P transport GO:0007411 P axon guidance GO:0008643 P carbohydrate transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0034976 P response to endoplasmic reticulum stress GO:0055085 P transmembrane transport GO:0070983 P dendrite guidance GO:0072334 P UDP-galactose transmembrane transport
2332	O_BomoMSG1209_5prime_partial:A_BomoMSG_c5536_g1_i1 101bp	Bomo_Chr10
2333	O_BomoMSG120_internal:A_BomoMSG_c424_g1_i1 108bp	Bomo_Chr16	transport_and_Golgi_organization_protein_2_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005737 C cytoplasm GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0007030 P Golgi organization GO:0009306 P protein secretion
2334	O_BomoMSG12100_complete:A_BomoMSG_c23625_g1_i2 132bp	Bomo_Chr1
2335	O_BomoMSG12101_complete:A_BomoMSG_c23625_g1_i3 320bp	Bomo_Chr1	solute_carrier_family_35_member_B1,_partial_[synthetic_construct]	GO:0005459 F UDP-galactose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006487 P protein N-linked glycosylation GO:0006810 P transport GO:0007411 P axon guidance GO:0008643 P carbohydrate transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0034976 P response to endoplasmic reticulum stress GO:0055085 P transmembrane transport GO:0070983 P dendrite guidance GO:0072334 P UDP-galactose transmembrane transport
2336	O_BomoMSG12102_complete:A_BomoMSG_c23625_g1_i3 132bp	Bomo_Chr1
2337	O_BomoMSG12103_complete:A_BomoMSG_c23627_g1_i1 404bp	Bomo_Chr1	prostatic_acid_phosphatase-like_[Bombyx_mori]	GO:0003993 F acid phosphatase activity GO:0005764 C lysosome GO:0005765 C lysosomal membrane GO:0008152 P metabolic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0043202 C lysosomal lumen
2338	O_BomoMSG12104_complete:A_BomoMSG_c23627_g1_i3 432bp	Bomo_Chr1	prostatic_acid_phosphatase-like_[Bombyx_mori]	GO:0003993 F acid phosphatase activity GO:0005764 C lysosome GO:0005765 C lysosomal membrane GO:0008152 P metabolic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0043202 C lysosomal lumen
2339	O_BomoMSG12105_5prime_partial:A_BomoMSG_c23628_g1_i1 940bp	Bomo_Chr22	Uncharacterized_protein_OBRU01_08796,_partial_[Operophtera_brumata]
2340	O_BomoMSG12106_complete:A_BomoMSG_c23628_g1_i2 776bp	Bomo_Chr22	Uncharacterized_protein_OBRU01_08796,_partial_[Operophtera_brumata]