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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2251 O_BomoMSG12026_3prime_partial:A_BomoMSG_c23579_g1_i1
248bp
 protein_Daple_[Bombyx_mori]
GO:0001932 P regulation of protein phosphorylation
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0007399 P nervous system development
GO:0008017 F microtubule binding
GO:0010975 P regulation of neuron projection development
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0031410 C cytoplasmic vesicle
GO:0031929 P TOR signaling
GO:0032148 P activation of protein kinase B activity
GO:0032956 P regulation of actin cytoskeleton organization
GO:0035091 F phosphatidylinositol binding
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043422 F protein kinase B binding
GO:0061024 P membrane organization
2252 O_BomoMSG12027_internal:A_BomoMSG_c23579_g2_i1
269bp
 protein_Daple_[Bombyx_mori]
GO:0001932 P regulation of protein phosphorylation
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0007399 P nervous system development
GO:0008017 F microtubule binding
GO:0010975 P regulation of neuron projection development
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0031410 C cytoplasmic vesicle
GO:0031929 P TOR signaling
GO:0032148 P activation of protein kinase B activity
GO:0032956 P regulation of actin cytoskeleton organization
GO:0035091 F phosphatidylinositol binding
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043422 F protein kinase B binding
GO:0061024 P membrane organization
2253 O_BomoMSG12028_5prime_partial:A_BomoMSG_c23579_g2_i1
191bp
2254 O_BomoMSG12029_internal:A_BomoMSG_c23581_g1_i1
292bp
 A-kinase_anchor_protein_17A_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042113 P B cell activation
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0051018 F protein kinase A binding
2255 O_BomoMSG1202_internal:A_BomoMSG_c5517_g1_i1
212bp
 kalirin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2256 O_BomoMSG12030_internal:A_BomoMSG_c23581_g1_i2
475bp
 A-kinase_anchor_protein_17A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042113 P B cell activation
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0051018 F protein kinase A binding
2257 O_BomoMSG12031_complete:A_BomoMSG_c23582_g1_i2
204bp
 PRKR-interacting_protein_1_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
2258 O_BomoMSG12032_5prime_partial:A_BomoMSG_c23583_g1_i2
152bp
 kalirin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
2259 O_BomoMSG12033_complete:A_BomoMSG_c23584_g1_i1
216bp
 SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001741 C XY body
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006323 P DNA packaging
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0008286 P insulin receptor signaling pathway
GO:0009887 P animal organ morphogenesis
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0030850 P prostate gland development
GO:0031492 F nucleosomal DNA binding
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
2260 O_BomoMSG12034_3prime_partial:A_BomoMSG_c23584_g1_i1
144bp
2261 O_BomoMSG12035_3prime_partial:A_BomoMSG_c23586_g1_i1
102bp
2262 O_BomoMSG12036_internal:A_BomoMSG_c23587_g1_i6
217bp
 DNA_repair_protein_XRCC1_isoform_X2_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
2263 O_BomoMSG12037_5prime_partial:A_BomoMSG_c23587_g1_i6
147bp
2264 O_BomoMSG12038_5prime_partial:A_BomoMSG_c23587_g1_i8
181bp
 DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
2265 O_BomoMSG12039_5prime_partial:A_BomoMSG_c23587_g1_i8
161bp
2266 O_BomoMSG1203_3prime_partial:A_BomoMSG_c5517_g1_i1
171bp
2267 O_BomoMSG12040_complete:A_BomoMSG_c23590_g1_i1
289bp
 CCR4-NOT_transcription_complex_subunit_7_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2268 O_BomoMSG12041_internal:A_BomoMSG_c23591_g1_i1
409bp
 serine/threonine-protein_kinase_10_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030334 P regulation of cell migration
GO:0031122 P cytoplasmic microtubule organization
GO:0031252 C cell leading edge
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0046777 P protein autophosphorylation
GO:0051893 P regulation of focal adhesion assembly
GO:0070062 C extracellular exosome
2269 O_BomoMSG12042_5prime_partial:A_BomoMSG_c23591_g1_i1
208bp
2270 O_BomoMSG12043_5prime_partial:A_BomoMSG_c23591_g1_i1
106bp
2271 O_BomoMSG12044_internal:A_BomoMSG_c23591_g2_i1
226bp
 serine/threonine-protein_kinase_10_[Bombyx_mori]
2272 O_BomoMSG12045_5prime_partial:A_BomoMSG_c23591_g2_i1
108bp
2273 O_BomoMSG12046_internal:A_BomoMSG_c23594_g1_i1
153bp
 retinol-binding_protein_pinta_[Bombyx_mori]
2274 O_BomoMSG12047_5prime_partial:A_BomoMSG_c23594_g1_i2
244bp
 retinol-binding_protein_pinta_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
2275 O_BomoMSG12048_3prime_partial:A_BomoMSG_c23600_g1_i1
199bp
 uncharacterized_protein_LOC101741301_[Bombyx_mori]
2276 O_BomoMSG12049_internal:A_BomoMSG_c23601_g1_i1
132bp
 nuclear_pore_complex_protein_Nup107_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
2277 O_BomoMSG1204_internal:A_BomoMSG_c5519_g1_i1
207bp
 gastrula_zinc_finger_protein_XlCGF57.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2278 O_BomoMSG12050_3prime_partial:A_BomoMSG_c23601_g1_i2
355bp
 nuclear_pore_complex_protein_Nup107_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003674 F molecular_function
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
2279 O_BomoMSG12051_5prime_partial:A_BomoMSG_c23602_g1_i1
196bp
 PREDICTED:_cyclin-dependent_kinase_14_isoform_X2_[Papilio_xuthus]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
2280 O_BomoMSG12052_3prime_partial:A_BomoMSG_c23602_g1_i1
152bp
 cyclin-dependent_kinase_14,_partial_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000308 C cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0060828 P regulation of canonical Wnt signaling pathway
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