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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2221 O_BomoMSG119_internal:A_BomoMSG_c421_g1_i1
124bp
 transmembrane_7_superfamily_member_3_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
2222 O_BomoMSG11_internal:A_BomoMSG_c97_g1_i1
109bp
 DNA_repair_protein_XRCC3-like_[Bombyx_mori]
GO:0000150 F DNA strand exchange activity
GO:0000166 F nucleotide binding
GO:0000400 F four-way junction DNA binding
GO:0000707 P meiotic DNA recombinase assembly
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005657 C replication fork
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008821 F crossover junction endodeoxyribonuclease activity
GO:0010033 P response to organic substance
GO:0010212 P response to ionizing radiation
GO:0010824 P regulation of centrosome duplication
GO:0033063 C Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033065 C Rad51C-XRCC3 complex
GO:0042148 P strand invasion
GO:0048471 C perinuclear region of cytoplasm
GO:0071140 P resolution of mitotic recombination intermediates
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090656 P t-circle formation
2223 O_BomoMSG12000_5prime_partial:A_BomoMSG_c23562_g1_i2
242bp
 pleckstrin_homology_domain-containing_family_F_member_2_isoform_X1_[Bombyx_mori]
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030133 C transport vesicle
GO:0031901 C early endosome membrane
GO:0046872 F metal ion binding
2224 O_BomoMSG12001_complete:A_BomoMSG_c23562_g1_i2
143bp
2225 O_BomoMSG12002_internal:A_BomoMSG_c23563_g1_i1
239bp
 uncharacterized_protein_LOC110385582_[Bombyx_mori]
2226 O_BomoMSG12003_internal:A_BomoMSG_c23565_g1_i1
331bp
 PREDICTED:_uncharacterized_protein_LOC105381701_[Plutella_xylostella]
2227 O_BomoMSG12004_complete:A_BomoMSG_c23565_g1_i1
100bp
2228 O_BomoMSG12005_internal:A_BomoMSG_c23565_g2_i1
269bp
 uncharacterized_protein_LOC110374727_[Helicoverpa_armigera]
2229 O_BomoMSG12006_complete:A_BomoMSG_c23567_g1_i2
126bp
 multifunctional_methyltransferase_subunit_TRM112-like_protein_[Bombyx_mori]
GO:0008276 F protein methyltransferase activity
GO:0018364 P peptidyl-glutamine methylation
GO:0030488 P tRNA methylation
GO:0043234 C protein-containing complex
GO:0070062 C extracellular exosome
GO:0070476 P rRNA (guanine-N7)-methylation
2230 O_BomoMSG12007_complete:A_BomoMSG_c23567_g1_i3
126bp
 multifunctional_methyltransferase_subunit_TRM112-like_protein_[Bombyx_mori]
GO:0008276 F protein methyltransferase activity
GO:0018364 P peptidyl-glutamine methylation
GO:0030488 P tRNA methylation
GO:0043234 C protein-containing complex
GO:0070062 C extracellular exosome
GO:0070476 P rRNA (guanine-N7)-methylation
2231 O_BomoMSG12008_complete:A_BomoMSG_c23568_g1_i1
308bp
 complex_I_intermediate-associated_protein_30,_mitochondrial_[Bombyx_mori]
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006119 P oxidative phosphorylation
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0007005 P mitochondrion organization
GO:0009408 P response to heat
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0042594 P response to starvation
GO:0051082 F unfolded protein binding
GO:0055093 P response to hyperoxia
2232 O_BomoMSG12009_5prime_partial:A_BomoMSG_c23568_g1_i2
287bp
 complex_I_intermediate-associated_protein_30,_mitochondrial_[Bombyx_mori]
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006119 P oxidative phosphorylation
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0007005 P mitochondrion organization
GO:0009408 P response to heat
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0042594 P response to starvation
GO:0051082 F unfolded protein binding
GO:0055093 P response to hyperoxia
2233 O_BomoMSG1200_complete:A_BomoMSG_c5516_g1_i1
256bp
 phosphoglyceromutase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004082 F bisphosphoglycerate mutase activity
GO:0004083 F bisphosphoglycerate 2-phosphatase activity
GO:0004619 F phosphoglycerate mutase activity
GO:0005829 C cytosol
GO:0006094 P gluconeogenesis
GO:0006096 P glycolytic process
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016853 F isomerase activity
GO:0016868 F intramolecular transferase activity, phosphotransferases
GO:0043209 C myelin sheath
GO:0043456 P regulation of pentose-phosphate shunt
GO:0046538 F 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity
2234 O_BomoMSG12010_3prime_partial:A_BomoMSG_c23569_g1_i1
197bp
 syntaxin-17_isoform_X1_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000421 C autophagosome membrane
GO:0005484 F SNAP receptor activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0006914 P autophagy
GO:0007030 P Golgi organization
GO:0012505 C endomembrane system
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019903 F protein phosphatase binding
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030868 C smooth endoplasmic reticulum membrane
GO:0030897 C HOPS complex
GO:0031201 C SNARE complex
GO:0031410 C cytoplasmic vesicle
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0034497 P protein localization to phagophore assembly site
GO:0044233 C mitochondria-associated endoplasmic reticulum membrane
GO:0048278 P vesicle docking
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:0097352 P autophagosome maturation
2235 O_BomoMSG12011_3prime_partial:A_BomoMSG_c23569_g1_i1
178bp
 uncharacterized_protein_LOC101747035_isoform_X2_[Bombyx_mori]
2236 O_BomoMSG12012_5prime_partial:A_BomoMSG_c23569_g1_i1
167bp
2237 O_BomoMSG12013_internal:A_BomoMSG_c23571_g1_i1
182bp
 sphingomyelin_synthase-related_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0033188 F sphingomyelin synthase activity
GO:0046513 P ceramide biosynthetic process
GO:0047493 F ceramide cholinephosphotransferase activity
GO:0060305 P regulation of cell diameter
GO:2000303 P regulation of ceramide biosynthetic process
2238 O_BomoMSG12014_5prime_partial:A_BomoMSG_c23571_g2_i1
152bp
 sphingomyelin_synthase-related_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0033188 F sphingomyelin synthase activity
GO:0046513 P ceramide biosynthetic process
GO:0047493 F ceramide cholinephosphotransferase activity
GO:0060305 P regulation of cell diameter
GO:2000303 P regulation of ceramide biosynthetic process
2239 O_BomoMSG12015_3prime_partial:A_BomoMSG_c23571_g2_i1
110bp
2240 O_BomoMSG12016_3prime_partial:A_BomoMSG_c23572_g1_i2
299bp
 macoilin_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007420 P brain development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030424 C axon
GO:0031965 C nuclear membrane
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0044306 C neuron projection terminus
GO:0045202 C synapse
2241 O_BomoMSG12017_complete:A_BomoMSG_c23572_g1_i2
183bp
2242 O_BomoMSG12018_complete:A_BomoMSG_c23573_g1_i1
214bp
 transmembrane_protein_70_homolog,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0032592 C integral component of mitochondrial membrane
GO:0033615 P mitochondrial proton-transporting ATP synthase complex assembly
2243 O_BomoMSG12019_complete:A_BomoMSG_c23574_g1_i1
235bp
 pyroglutamyl-peptidase_1_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0016920 F pyroglutamyl-peptidase activity
2244 O_BomoMSG1201_complete:A_BomoMSG_c5516_g1_i1
117bp
 hypothetical_protein_BN132_3615_[Cronobacter_turicensis_564]
2245 O_BomoMSG12020_complete:A_BomoMSG_c23574_g1_i2
156bp
 pyroglutamyl-peptidase_1_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0016920 F pyroglutamyl-peptidase activity
2246 O_BomoMSG12021_5prime_partial:A_BomoMSG_c23574_g1_i4
173bp
 pyroglutamyl-peptidase_1_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0016920 F pyroglutamyl-peptidase activity
2247 O_BomoMSG12022_5prime_partial:A_BomoMSG_c23575_g1_i1
331bp
 uncharacterized_protein_LOC110376048_[Helicoverpa_armigera]
2248 O_BomoMSG12023_3prime_partial:A_BomoMSG_c23575_g1_i1
260bp
 PREDICTED:_uncharacterized_protein_LOC105396011_[Plutella_xylostella]
2249 O_BomoMSG12024_complete:A_BomoMSG_c23577_g1_i1
722bp
 uncharacterized_protein_LOC101747119_isoform_X2_[Bombyx_mori]
2250 O_BomoMSG12025_complete:A_BomoMSG_c23577_g1_i1
106bp
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