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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2041 O_BomoMSG11838_5prime_partial:A_BomoMSG_c23473_g1_i1
103bp
2042 O_BomoMSG11839_3prime_partial:A_BomoMSG_c23473_g1_i2
314bp
 acetylglucosaminyltransferase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001701 P in utero embryonic development
GO:0003827 F alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0006049 P UDP-N-acetylglucosamine catabolic process
GO:0006486 P protein glycosylation
GO:0008375 F acetylglucosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1903561 C extracellular vesicle
2043 O_BomoMSG1183_complete:A_BomoMSG_c5492_g1_i1
206bp
 transmembrane_trafficking_protein_precursor_[Bombyx_mori]
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2044 O_BomoMSG11840_5prime_partial:A_BomoMSG_c23473_g1_i2
103bp
2045 O_BomoMSG11841_5prime_partial:A_BomoMSG_c23475_g1_i1
318bp
 pre-mRNA-splicing_factor_38_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2046 O_BomoMSG11842_complete:A_BomoMSG_c23475_g1_i1
181bp
2047 O_BomoMSG11843_complete:A_BomoMSG_c23476_g1_i1
299bp
 cyclin_dependent_kinase_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005176 F ErbB-2 class receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007399 P nervous system development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030182 P neuron differentiation
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030549 F acetylcholine receptor activator activity
GO:0031175 P neuron projection development
GO:0031594 C neuromuscular junction
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043125 F ErbB-3 class receptor binding
GO:0043204 C perikaryon
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048511 P rhythmic process
GO:0050321 F tau-protein kinase activity
GO:0051301 P cell division
GO:0061001 P regulation of dendritic spine morphogenesis
GO:2000273 P positive regulation of signaling receptor activity
2048 O_BomoMSG11844_5prime_partial:A_BomoMSG_c23477_g1_i1
130bp
 RNA_pseudouridylate_synthase_domain-containing_protein_1_isoform_X4_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
2049 O_BomoMSG11845_complete:A_BomoMSG_c23477_g1_i2
289bp
 RNA_pseudouridylate_synthase_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
2050 O_BomoMSG11846_complete:A_BomoMSG_c23477_g1_i2
107bp
2051 O_BomoMSG11847_complete:A_BomoMSG_c23477_g1_i3
299bp
 RNA_pseudouridylate_synthase_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
2052 O_BomoMSG11848_complete:A_BomoMSG_c23477_g1_i3
107bp
2053 O_BomoMSG11849_internal:A_BomoMSG_c23478_g1_i1
286bp
 E3_ubiquitin-protein_ligase_Mdm2-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0071157 P regulation of cell cycle
2054 O_BomoMSG1184_complete:A_BomoMSG_c5493_g1_i1
323bp
 WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
2055 O_BomoMSG11850_complete:A_BomoMSG_c23478_g1_i1
120bp
2056 O_BomoMSG11851_3prime_partial:A_BomoMSG_c23478_g1_i2
313bp
 E3_ubiquitin-protein_ligase_Mdm2-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0071157 P regulation of cell cycle
2057 O_BomoMSG11852_complete:A_BomoMSG_c23478_g1_i2
120bp
2058 O_BomoMSG11853_complete:A_BomoMSG_c23480_g1_i2
120bp
 elongin-B_isoform_X1_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016567 P protein ubiquitination
GO:0030891 C VCB complex
GO:0032403 F protein-containing complex binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070449 C elongin complex
2059 O_BomoMSG11854_complete:A_BomoMSG_c23481_g1_i1
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
2060 O_BomoMSG11855_complete:A_BomoMSG_c23481_g1_i1
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
2061 O_BomoMSG11856_complete:A_BomoMSG_c23482_g1_i1
989bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1_precursor_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0008201 F heparin binding
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010573 P vascular endothelial growth factor production
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0032964 P collagen biosynthetic process
GO:0043206 P supramolecular fiber organization
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900748 P positive regulation of vascular endothelial growth factor signaling pathway
2062 O_BomoMSG11857_complete:A_BomoMSG_c23482_g1_i2
1030bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1_precursor_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0008201 F heparin binding
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010573 P vascular endothelial growth factor production
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0032964 P collagen biosynthetic process
GO:0043206 P supramolecular fiber organization
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900748 P positive regulation of vascular endothelial growth factor signaling pathway
2063 O_BomoMSG11858_3prime_partial:A_BomoMSG_c23483_g1_i1
394bp
 sortilin-related_receptor_isoform_X4_[Helicoverpa_armigera]
GO:0000042 P protein localization to Golgi apparatus
GO:0001540 F amyloid-beta binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005641 C nuclear envelope lumen
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006605 P protein targeting
GO:0006622 P protein targeting to lysosome
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0014910 P regulation of smooth muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030306 F small GTPase binding
GO:0031985 C Golgi cisterna
GO:0032091 P negative regulation of protein binding
GO:0032460 P negative regulation of protein oligomerization
GO:0034362 C low-density lipoprotein particle
GO:0043407 P negative regulation of MAP kinase activity
GO:0045053 P protein retention in Golgi apparatus
GO:0045732 P positive regulation of protein catabolic process
GO:0048471 C perinuclear region of cytoplasm
GO:0050768 P negative regulation of neurogenesis
GO:0051604 P protein maturation
GO:0055037 C recycling endosome
GO:0070062 C extracellular exosome
GO:0070863 P positive regulation of protein exit from endoplasmic reticulum
GO:1901215 P negative regulation of neuron death
GO:1902430 P negative regulation of amyloid-beta formation
GO:1902771 P positive regulation of choline O-acetyltransferase activity
GO:1902948 P negative regulation of tau-protein kinase activity
GO:1902953 P positive regulation of ER to Golgi vesicle-mediated transport
GO:1902955 P positive regulation of early endosome to recycling endosome transport
GO:1902960 P negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
GO:1902963 P negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process
GO:1902966 P positive regulation of protein localization to early endosome
GO:1902997 P negative regulation of neurofibrillary tangle assembly
GO:2001137 P positive regulation of endocytic recycling
2064 O_BomoMSG11859_complete:A_BomoMSG_c23483_g1_i1
109bp
2065 O_BomoMSG1185_complete:A_BomoMSG_c5494_g1_i1
294bp
 nuclear_Y/CCAAT-box_binding_factor_C_subunit_NF/YC_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0046982 F protein heterodimerization activity
2066 O_BomoMSG11860_5prime_partial:A_BomoMSG_c23485_g1_i2
192bp
 protein_canopy_4_[Bombyx_mori]
GO:0005102 F signaling receptor binding
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0032880 P regulation of protein localization
2067 O_BomoMSG11861_5prime_partial:A_BomoMSG_c23485_g1_i4
199bp
 protein_canopy_4_[Bombyx_mori]
GO:0005102 F signaling receptor binding
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0032880 P regulation of protein localization
2068 O_BomoMSG11862_3prime_partial:A_BomoMSG_c23486_g1_i1
233bp
2069 O_BomoMSG11863_5prime_partial:A_BomoMSG_c23486_g1_i1
176bp
 spectrin_beta_chain_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
2070 O_BomoMSG11864_5prime_partial:A_BomoMSG_c23486_g1_i1
103bp
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