SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1711 O_BomoMSG11540_3prime_partial:A_BomoMSG_c23328_g1_i1
354bp
 anaphase-promoting_complex_subunit_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007399 P nervous system development
GO:0016567 P protein ubiquitination
GO:0030154 P cell differentiation
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031625 F ubiquitin protein ligase binding
GO:0031915 P positive regulation of synaptic plasticity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045773 P positive regulation of axon extension
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0070979 P protein K11-linked ubiquitination
GO:0090129 P positive regulation of synapse maturation
1712 O_BomoMSG11541_complete:A_BomoMSG_c23329_g1_i1
452bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
1713 O_BomoMSG11542_5prime_partial:A_BomoMSG_c23329_g1_i2
302bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
1714 O_BomoMSG11543_internal:A_BomoMSG_c23330_g1_i1
331bp
 protein_spindle-F-like,_partial_[Bombyx_mori]
1715 O_BomoMSG11544_5prime_partial:A_BomoMSG_c23330_g1_i1
119bp
1716 O_BomoMSG11545_3prime_partial:A_BomoMSG_c23330_g1_i2
344bp
 protein_spindle-F_[Bombyx_mori]
1717 O_BomoMSG11546_5prime_partial:A_BomoMSG_c23330_g1_i2
119bp
1718 O_BomoMSG11547_3prime_partial:A_BomoMSG_c23331_g1_i1
181bp
 aprataxin-like_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0033699 F DNA 5'-adenosine monophosphate hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1719 O_BomoMSG11548_internal:A_BomoMSG_c23333_g1_i1
296bp
 exocyst_complex_component_5_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008013 F beta-catenin binding
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0048278 P vesicle docking
GO:0090522 P vesicle tethering involved in exocytosis
GO:0098793 C presynapse
1720 O_BomoMSG11549_complete:A_BomoMSG_c23333_g1_i1
113bp
1721 O_BomoMSG1154_internal:A_BomoMSG_c5423_g1_i1
140bp
 uncharacterized_protein_LOC101746966_isoform_X1_[Bombyx_mori]
1722 O_BomoMSG11550_internal:A_BomoMSG_c23333_g1_i2
137bp
 exocyst_complex_component_5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0017160 F small GTPase binding
GO:0047485 F protein N-terminus binding
GO:0048278 P vesicle docking
GO:0061024 P membrane organization
1723 O_BomoMSG11551_3prime_partial:A_BomoMSG_c23333_g1_i2
114bp
1724 O_BomoMSG11552_internal:A_BomoMSG_c23334_g1_i1
392bp
 organic_cation_transporter_protein_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1725 O_BomoMSG11553_5prime_partial:A_BomoMSG_c23334_g2_i1
137bp
 organic_cation_transporter_protein_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1726 O_BomoMSG11554_complete:A_BomoMSG_c23334_g2_i1
104bp
1727 O_BomoMSG11555_complete:A_BomoMSG_c23335_g1_i1
122bp
1728 O_BomoMSG11556_3prime_partial:A_BomoMSG_c23336_g1_i1
154bp
 uncharacterized_protein_LOC101736016_[Bombyx_mori]
1729 O_BomoMSG11557_internal:A_BomoMSG_c23338_g1_i1
299bp
 HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0019079 P viral genome replication
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0044822 F RNA binding
1730 O_BomoMSG11558_3prime_partial:A_BomoMSG_c23338_g1_i2
542bp
 HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
1731 O_BomoMSG11559_3prime_partial:A_BomoMSG_c23338_g1_i3
542bp
 HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
1732 O_BomoMSG1155_complete:A_BomoMSG_c5427_g1_i1
497bp
 dihydrolipoamide_dehydrogenase_[Bombyx_mori]
GO:0004148 F dihydrolipoyl dehydrogenase activity
GO:0005737 C cytoplasm
GO:0006096 P glycolytic process
GO:0016491 F oxidoreductase activity
GO:0016668 F oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0045454 P cell redox homeostasis
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
1733 O_BomoMSG11560_complete:A_BomoMSG_c23340_g1_i1
144bp
 iron-sulfur_assembly_protein_IscA-like_2,_mitochondrial_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005739 C mitochondrion
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
1734 O_BomoMSG11561_5prime_partial:A_BomoMSG_c23343_g1_i1
224bp
 gastrulation_defective_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
1735 O_BomoMSG11562_internal:A_BomoMSG_c23343_g1_i2
463bp
 gastrulation_defective_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
1736 O_BomoMSG11563_5prime_partial:A_BomoMSG_c23343_g1_i2
107bp
1737 O_BomoMSG11564_complete:A_BomoMSG_c23343_g1_i2
100bp
1738 O_BomoMSG11565_internal:A_BomoMSG_c23343_g1_i3
549bp
 gastrulation_defective_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
1739 O_BomoMSG11566_5prime_partial:A_BomoMSG_c23343_g1_i3
107bp
1740 O_BomoMSG11567_complete:A_BomoMSG_c23343_g1_i3
100bp
previous next from show/29137

- SilkBase 1999-2023 -