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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1741 O_BomoMSG11568_internal:A_BomoMSG_c23344_g1_i2
126bp
 probable_ATP-dependent_RNA_helicase_DDX20_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048477 P oogenesis
GO:0050810 P regulation of steroid biosynthetic process
GO:0051170 P import into nucleus
GO:0070491 F DNA-binding transcription factor binding
GO:0090571 C RNA polymerase II transcription repressor complex
GO:0097504 C Gemini of coiled bodies
1742 O_BomoMSG11569_3prime_partial:A_BomoMSG_c23344_g1_i3
246bp
 probable_ATP-dependent_RNA_helicase_DDX20_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
1743 O_BomoMSG1156_internal:A_BomoMSG_c5430_g1_i1
105bp
 extracellular_serine/threonine_protein_CG31145_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
1744 O_BomoMSG11570_5prime_partial:A_BomoMSG_c23345_g1_i1
191bp
 uncharacterized_protein_LOC101737894_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0055114 P obsolete oxidation-reduction process
1745 O_BomoMSG11571_complete:A_BomoMSG_c23345_g1_i2
245bp
 uncharacterized_protein_LOC101737894_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0055114 P obsolete oxidation-reduction process
1746 O_BomoMSG11572_3prime_partial:A_BomoMSG_c23346_g1_i1
347bp
 protein_bicaudal_D_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007309 P oocyte axis specification
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008298 P intracellular mRNA localization
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017137 F small GTPase binding
GO:0019233 P sensory perception of pain
GO:0030100 P regulation of endocytosis
GO:0030154 P cell differentiation
GO:0030669 C clathrin-coated endocytic vesicle membrane
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0032050 F clathrin heavy chain binding
GO:0045502 F dynein complex binding
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
GO:0070727 P cellular macromolecule localization
GO:2000302 P positive regulation of synaptic vesicle exocytosis
GO:2000370 P positive regulation of clathrin-dependent endocytosis
1747 O_BomoMSG11573_complete:A_BomoMSG_c23346_g1_i1
145bp
1748 O_BomoMSG11574_complete:A_BomoMSG_c23346_g1_i1
120bp
1749 O_BomoMSG11575_internal:A_BomoMSG_c23348_g1_i1
506bp
 LIM_domain-containing_protein_jub_[Bombyx_mori]
GO:0000242 C pericentriolar material
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0030054 C cell junction
GO:0030707 P ovarian follicle cell development
GO:0035329 P hippo signaling
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045572 P positive regulation of imaginal disc growth
GO:0046622 P positive regulation of organ growth
GO:0046872 F metal ion binding
GO:0071539 P protein localization to centrosome
1750 O_BomoMSG11576_complete:A_BomoMSG_c23350_g1_i1
338bp
 LOW_QUALITY_PROTEIN:_growth_hormone-regulated_TBC_protein_1-A_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0090630 P activation of GTPase activity
1751 O_BomoMSG11577_5prime_partial:A_BomoMSG_c23351_g1_i1
1057bp
 Niemann-Pick_C1_protein_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
1752 O_BomoMSG11578_complete:A_BomoMSG_c23351_g1_i1
369bp
1753 O_BomoMSG11579_complete:A_BomoMSG_c23351_g1_i1
124bp
 hypothetical_protein_ALC53_04645_[Atta_colombica]
1754 O_BomoMSG1157_5prime_partial:A_BomoMSG_c5430_g1_i1
104bp
1755 O_BomoMSG11580_5prime_partial:A_BomoMSG_c23351_g1_i2
1019bp
 Niemann-Pick_C1_protein_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
1756 O_BomoMSG11581_complete:A_BomoMSG_c23351_g1_i2
369bp
1757 O_BomoMSG11582_complete:A_BomoMSG_c23351_g1_i2
124bp
 hypothetical_protein_ALC53_04645_[Atta_colombica]
1758 O_BomoMSG11583_5prime_partial:A_BomoMSG_c23351_g1_i3
1081bp
 Niemann-Pick_C1_protein_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
1759 O_BomoMSG11584_complete:A_BomoMSG_c23351_g1_i3
369bp
1760 O_BomoMSG11585_complete:A_BomoMSG_c23351_g1_i3
124bp
 hypothetical_protein_ALC53_04645_[Atta_colombica]
1761 O_BomoMSG11586_complete:A_BomoMSG_c23352_g1_i1
1205bp
 adhesive_plaque_matrix_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
1762 O_BomoMSG11587_complete:A_BomoMSG_c23352_g1_i1
154bp
1763 O_BomoMSG11588_complete:A_BomoMSG_c23352_g1_i1
137bp
1764 O_BomoMSG11589_complete:A_BomoMSG_c23352_g1_i2
1281bp
 adhesive_plaque_matrix_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
1765 O_BomoMSG1158_5prime_partial:A_BomoMSG_c5432_g1_i1
235bp
 inducible_metalloproteinase_inhibitor_protein_[Bombyx_mori]
GO:0005576 C extracellular region
1766 O_BomoMSG11590_complete:A_BomoMSG_c23352_g1_i2
154bp
1767 O_BomoMSG11591_complete:A_BomoMSG_c23352_g1_i2
137bp
1768 O_BomoMSG11592_5prime_partial:A_BomoMSG_c23352_g1_i3
1067bp
 adhesive_plaque_matrix_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
1769 O_BomoMSG11593_complete:A_BomoMSG_c23352_g1_i3
154bp
1770 O_BomoMSG11594_complete:A_BomoMSG_c23352_g1_i3
137bp
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