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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1681 O_BomoMSG11513_5prime_partial:A_BomoMSG_c23321_g1_i2
116bp
1682 O_BomoMSG11514_complete:A_BomoMSG_c23321_g1_i2
100bp
1683 O_BomoMSG11515_3prime_partial:A_BomoMSG_c23321_g1_i3
237bp
 uncharacterized_protein_LOC101741550_[Bombyx_mori]
1684 O_BomoMSG11516_5prime_partial:A_BomoMSG_c23321_g1_i3
116bp
1685 O_BomoMSG11517_3prime_partial:A_BomoMSG_c23321_g1_i3
101bp
1686 O_BomoMSG11518_complete:A_BomoMSG_c23321_g1_i3
100bp
1687 O_BomoMSG11519_5prime_partial:A_BomoMSG_c23322_g1_i1
247bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1-A_isoform_X1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008285 P negative regulation of cell population proliferation
GO:0030154 P cell differentiation
GO:0043044 P chromatin remodeling
GO:0090544 C SWI/SNF superfamily-type complex
1688 O_BomoMSG1151_complete:A_BomoMSG_c5422_g1_i1
495bp
 protein_LTV1_homolog_[Bombyx_mori]
GO:0000056 P ribosomal small subunit export from nucleus
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0016049 P cell growth
GO:0022627 C cytosolic small ribosomal subunit
GO:0042023 P DNA endoreduplication
GO:0042274 P ribosomal small subunit biogenesis
GO:0045793 P positive regulation of cell size
1689 O_BomoMSG11520_complete:A_BomoMSG_c23322_g1_i2
401bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1-A_isoform_X1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008285 P negative regulation of cell population proliferation
GO:0030154 P cell differentiation
GO:0043044 P chromatin remodeling
GO:0090544 C SWI/SNF superfamily-type complex
1690 O_BomoMSG11521_5prime_partial:A_BomoMSG_c23322_g1_i3
159bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1-A_isoform_X1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008285 P negative regulation of cell population proliferation
GO:0030154 P cell differentiation
GO:0043044 P chromatin remodeling
GO:0090544 C SWI/SNF superfamily-type complex
1691 O_BomoMSG11522_5prime_partial:A_BomoMSG_c23322_g1_i3
142bp
1692 O_BomoMSG11523_complete:A_BomoMSG_c23324_g1_i1
397bp
 BSD_domain-containing_protein_1-B_[Bombyx_mori]
1693 O_BomoMSG11524_complete:A_BomoMSG_c23324_g1_i2
278bp
 BSD_domain-containing_protein_1-B_[Bombyx_mori]
1694 O_BomoMSG11525_complete:A_BomoMSG_c23324_g1_i4
310bp
 BSD_domain-containing_protein_1-B_[Bombyx_mori]
1695 O_BomoMSG11526_complete:A_BomoMSG_c23324_g1_i5
397bp
 BSD_domain-containing_protein_1-B_[Bombyx_mori]
1696 O_BomoMSG11527_internal:A_BomoMSG_c23325_g1_i1
162bp
 histone_acetyltransferase_KAT6A_isoform_X1_[Bombyx_mori]
1697 O_BomoMSG11528_5prime_partial:A_BomoMSG_c23325_g1_i1
104bp
1698 O_BomoMSG11529_5prime_partial:A_BomoMSG_c23325_g1_i1
102bp
1699 O_BomoMSG1152_complete:A_BomoMSG_c5422_g1_i1
178bp
1700 O_BomoMSG11530_internal:A_BomoMSG_c23325_g1_i2
549bp
 histone_acetyltransferase_KAT6A_isoform_X2_[Bombyx_mori]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0006323 P DNA packaging
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006473 P protein acetylation
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016407 F acetyltransferase activity
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0030099 P myeloid cell differentiation
GO:0043966 P histone H3 acetylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048513 P animal organ development
GO:0070776 C MOZ/MORF histone acetyltransferase complex
GO:0090398 P cellular senescence
GO:1901796 P regulation of signal transduction by p53 class mediator
1701 O_BomoMSG11531_complete:A_BomoMSG_c23325_g1_i2
125bp
1702 O_BomoMSG11532_5prime_partial:A_BomoMSG_c23325_g1_i2
116bp
 PREDICTED:_uncharacterized_protein_LOC109533369_[Dendroctonus_ponderosae]
1703 O_BomoMSG11533_5prime_partial:A_BomoMSG_c23325_g1_i2
104bp
1704 O_BomoMSG11534_internal:A_BomoMSG_c23326_g1_i1
415bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
1705 O_BomoMSG11535_complete:A_BomoMSG_c23326_g1_i1
207bp
1706 O_BomoMSG11536_internal:A_BomoMSG_c23326_g1_i2
374bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
1707 O_BomoMSG11537_complete:A_BomoMSG_c23326_g1_i2
207bp
1708 O_BomoMSG11538_5prime_partial:A_BomoMSG_c23326_g1_i2
108bp
1709 O_BomoMSG11539_complete:A_BomoMSG_c23327_g1_i1
384bp
 uncharacterized_protein_LOC101741417_isoform_X2_[Bombyx_mori]
1710 O_BomoMSG1153_complete:A_BomoMSG_c5422_g1_i1
123bp
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