SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12931 O_BomoMSG21639_complete:A_BomoMSG_c26959_g1_i7
315bp
 carbohydrate_sulfotransferase_11_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001537 F N-acetylgalactosamine 4-O-sulfotransferase activity
GO:0002063 P chondrocyte development
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0007585 P respiratory gaseous exchange by respiratory system
GO:0008146 F sulfotransferase activity
GO:0009791 P post-embryonic development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016051 P carbohydrate biosynthetic process
GO:0016740 F transferase activity
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030326 P embryonic limb morphogenesis
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0033037 P polysaccharide localization
GO:0036342 P post-anal tail morphogenesis
GO:0042127 P regulation of cell population proliferation
GO:0042733 P embryonic digit morphogenesis
GO:0043066 P negative regulation of apoptotic process
GO:0047756 F chondroitin 4-sulfotransferase activity
GO:0048589 P developmental growth
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050659 F N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
GO:0051216 P cartilage development
12932 O_BomoMSG2163_internal:A_BomoMSG_c10248_g1_i1
276bp
 uncharacterized_protein_LOC101747215_[Bombyx_mori]
GO:0005515 F protein binding
12933 O_BomoMSG21640_complete:A_BomoMSG_c26959_g1_i8
315bp
 carbohydrate_sulfotransferase_11_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001537 F N-acetylgalactosamine 4-O-sulfotransferase activity
GO:0002063 P chondrocyte development
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0007585 P respiratory gaseous exchange by respiratory system
GO:0008146 F sulfotransferase activity
GO:0009791 P post-embryonic development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016051 P carbohydrate biosynthetic process
GO:0016740 F transferase activity
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030326 P embryonic limb morphogenesis
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0033037 P polysaccharide localization
GO:0036342 P post-anal tail morphogenesis
GO:0042127 P regulation of cell population proliferation
GO:0042733 P embryonic digit morphogenesis
GO:0043066 P negative regulation of apoptotic process
GO:0047756 F chondroitin 4-sulfotransferase activity
GO:0048589 P developmental growth
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050659 F N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
GO:0051216 P cartilage development
12934 O_BomoMSG21641_internal:A_BomoMSG_c26960_g1_i1
121bp
12935 O_BomoMSG21642_internal:A_BomoMSG_c26960_g1_i1
120bp
 centromere_protein_F_[Bombyx_mori]
12936 O_BomoMSG21643_3prime_partial:A_BomoMSG_c26960_g1_i2
638bp
 centromere_protein_F_[Bombyx_mori]
12937 O_BomoMSG21644_5prime_partial:A_BomoMSG_c26960_g1_i2
117bp
12938 O_BomoMSG21645_internal:A_BomoMSG_c26960_g1_i3
386bp
 centromere_protein_F_[Bombyx_mori]
12939 O_BomoMSG21646_5prime_partial:A_BomoMSG_c26960_g1_i3
117bp
12940 O_BomoMSG21647_3prime_partial:A_BomoMSG_c26961_g2_i7
261bp
 tigger_transposable_element-derived_protein_4_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
12941 O_BomoMSG21648_5prime_partial:A_BomoMSG_c26962_g1_i1
431bp
 putative_Copia_protein_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12942 O_BomoMSG21649_5prime_partial:A_BomoMSG_c26962_g1_i2
588bp
 putative_Copia_protein_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12943 O_BomoMSG2164_5prime_partial:A_BomoMSG_c10248_g1_i1
265bp
12944 O_BomoMSG21650_5prime_partial:A_BomoMSG_c26962_g1_i3
819bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12945 O_BomoMSG21651_complete:A_BomoMSG_c26963_g1_i1
444bp
 UBX_domain-containing_protein_6_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0070062 C extracellular exosome
12946 O_BomoMSG21652_5prime_partial:A_BomoMSG_c26963_g1_i1
126bp
 PREDICTED:_uncharacterized_protein_LOC105383915_[Plutella_xylostella]
12947 O_BomoMSG21653_complete:A_BomoMSG_c26963_g1_i2
444bp
 UBX_domain-containing_protein_6_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0070062 C extracellular exosome
12948 O_BomoMSG21654_5prime_partial:A_BomoMSG_c26963_g1_i2
126bp
 PREDICTED:_uncharacterized_protein_LOC105383915_[Plutella_xylostella]
12949 O_BomoMSG21655_5prime_partial:A_BomoMSG_c26963_g2_i3
333bp
 serine/threonine-protein_kinase_10_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030334 P regulation of cell migration
GO:0031122 P cytoplasmic microtubule organization
GO:0031252 C cell leading edge
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0046777 P protein autophosphorylation
GO:0051893 P regulation of focal adhesion assembly
GO:0070062 C extracellular exosome
12950 O_BomoMSG21656_5prime_partial:A_BomoMSG_c26964_g1_i1
493bp
 LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_18_homolog_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007634 P optokinetic behavior
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031902 C late endosome membrane
GO:0035542 P regulation of SNARE complex assembly
GO:0043485 P endosome to pigment granule transport
GO:0045176 P apical protein localization
GO:0046872 F metal ion binding
GO:0048069 P eye pigmentation
GO:0048757 P pigment granule maturation
GO:0060036 P notochord cell vacuolation
12951 O_BomoMSG21657_complete:A_BomoMSG_c26964_g1_i1
218bp
12952 O_BomoMSG21658_complete:A_BomoMSG_c26964_g1_i2
972bp
 LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_18_homolog_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007634 P optokinetic behavior
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031902 C late endosome membrane
GO:0035542 P regulation of SNARE complex assembly
GO:0043485 P endosome to pigment granule transport
GO:0045176 P apical protein localization
GO:0046872 F metal ion binding
GO:0048069 P eye pigmentation
GO:0048757 P pigment granule maturation
GO:0060036 P notochord cell vacuolation
12953 O_BomoMSG21659_complete:A_BomoMSG_c26964_g1_i2
218bp
12954 O_BomoMSG2165_internal:A_BomoMSG_c10250_g1_i2
108bp
12955 O_BomoMSG21660_5prime_partial:A_BomoMSG_c26964_g1_i3
468bp
 LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_18_homolog_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0007275 P multicellular organism development
GO:0007634 P optokinetic behavior
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031902 C late endosome membrane
GO:0035542 P regulation of SNARE complex assembly
GO:0043485 P endosome to pigment granule transport
GO:0045176 P apical protein localization
GO:0046872 F metal ion binding
GO:0048069 P eye pigmentation
GO:0048757 P pigment granule maturation
GO:0060036 P notochord cell vacuolation
12956 O_BomoMSG21661_complete:A_BomoMSG_c26964_g1_i3
218bp
12957 O_BomoMSG21662_5prime_partial:A_BomoMSG_c26965_g1_i1
743bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
12958 O_BomoMSG21663_complete:A_BomoMSG_c26965_g1_i2
976bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
12959 O_BomoMSG21664_5prime_partial:A_BomoMSG_c26965_g1_i4
717bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
12960 O_BomoMSG21665_internal:A_BomoMSG_c26966_g1_i1
177bp
 gastrula_zinc_finger_protein_xFG20-1_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -