SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12901 O_BomoMSG21611_complete:A_BomoMSG_c26953_g1_i1
100bp
12902 O_BomoMSG21612_complete:A_BomoMSG_c26954_g1_i1
283bp
 SOCS2-12_protein_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0004860 F protein kinase inhibitor activity
GO:0005159 F insulin-like growth factor receptor binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006469 P negative regulation of protein kinase activity
GO:0007568 P aging
GO:0008269 F JAK pathway signal transduction adaptor activity
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0019221 P cytokine-mediated signaling pathway
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0043434 P response to peptide hormone
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046627 P negative regulation of insulin receptor signaling pathway
12903 O_BomoMSG21613_complete:A_BomoMSG_c26956_g1_i1
595bp
 alkylated_DNA_repair_protein_alkB_homolog_8_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002098 P tRNA wobble uridine modification
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016491 F oxidoreductase activity
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
12904 O_BomoMSG21614_complete:A_BomoMSG_c26956_g1_i1
238bp
12905 O_BomoMSG21615_complete:A_BomoMSG_c26956_g1_i1
175bp
12906 O_BomoMSG21616_complete:A_BomoMSG_c26956_g1_i2
471bp
 alkylated_DNA_repair_protein_alkB_homolog_8_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002098 P tRNA wobble uridine modification
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016491 F oxidoreductase activity
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
12907 O_BomoMSG21617_complete:A_BomoMSG_c26956_g1_i2
238bp
12908 O_BomoMSG21618_complete:A_BomoMSG_c26956_g1_i2
175bp
12909 O_BomoMSG21619_5prime_partial:A_BomoMSG_c26956_g1_i4
177bp
 alkylated_DNA_repair_protein_alkB_homolog_8_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002098 P tRNA wobble uridine modification
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016491 F oxidoreductase activity
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
12910 O_BomoMSG2161_5prime_partial:A_BomoMSG_c10239_g1_i2
159bp
12911 O_BomoMSG21620_complete:A_BomoMSG_c26956_g1_i4
175bp
12912 O_BomoMSG21621_5prime_partial:A_BomoMSG_c26956_g1_i5
373bp
 alkylated_DNA_repair_protein_alkB_homolog_8_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002098 P tRNA wobble uridine modification
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016491 F oxidoreductase activity
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
12913 O_BomoMSG21622_complete:A_BomoMSG_c26956_g1_i5
238bp
12914 O_BomoMSG21623_complete:A_BomoMSG_c26956_g1_i5
175bp
12915 O_BomoMSG21624_5prime_partial:A_BomoMSG_c26957_g1_i2
607bp
 ran_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007062 P sister chromatid cohesion
GO:0007165 P signal transduction
GO:0008536 F small GTPase binding
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0030425 C dendrite
GO:0031625 F ubiquitin protein ligase binding
GO:0031965 C nuclear membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0046826 P negative regulation of protein export from nucleus
GO:0048471 C perinuclear region of cytoplasm
GO:0048678 P response to axon injury
GO:0071375 P cellular response to peptide hormone stimulus
GO:0072686 C mitotic spindle
GO:1904115 C axon cytoplasm
GO:1904117 P cellular response to vasopressin
GO:1990723 C cytoplasmic periphery of the nuclear pore complex
12916 O_BomoMSG21625_complete:A_BomoMSG_c26957_g1_i2
182bp
12917 O_BomoMSG21626_complete:A_BomoMSG_c26957_g1_i2
147bp
12918 O_BomoMSG21627_5prime_partial:A_BomoMSG_c26957_g1_i3
228bp
 ran_GTPase-activating_protein_1_isoform_X2_[Bombyx_mori]
12919 O_BomoMSG21628_5prime_partial:A_BomoMSG_c26957_g1_i4
373bp
 ran_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0022008 P neurogenesis
GO:0043547 P positive regulation of GTPase activity
GO:0045132 P meiotic chromosome segregation
GO:0048471 C perinuclear region of cytoplasm
12920 O_BomoMSG21629_complete:A_BomoMSG_c26957_g1_i4
147bp
12921 O_BomoMSG2162_internal:A_BomoMSG_c10241_g1_i1
170bp
 membrane-bound_transcription_factor_site-1_protease_[Helicoverpa_armigera]
GO:0000139 C Golgi membrane
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
12922 O_BomoMSG21630_complete:A_BomoMSG_c26957_g1_i5
486bp
 ran_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007062 P sister chromatid cohesion
GO:0007165 P signal transduction
GO:0008536 F small GTPase binding
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0030425 C dendrite
GO:0031625 F ubiquitin protein ligase binding
GO:0031965 C nuclear membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0046826 P negative regulation of protein export from nucleus
GO:0048471 C perinuclear region of cytoplasm
GO:0048678 P response to axon injury
GO:0071375 P cellular response to peptide hormone stimulus
GO:0072686 C mitotic spindle
GO:1904115 C axon cytoplasm
GO:1904117 P cellular response to vasopressin
GO:1990723 C cytoplasmic periphery of the nuclear pore complex
12923 O_BomoMSG21631_complete:A_BomoMSG_c26957_g1_i5
147bp
12924 O_BomoMSG21632_complete:A_BomoMSG_c26957_g1_i5
144bp
12925 O_BomoMSG21633_5prime_partial:A_BomoMSG_c26958_g3_i1
247bp
 sorting_nexin-29_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
12926 O_BomoMSG21634_complete:A_BomoMSG_c26958_g3_i2
637bp
 sorting_nexin-29_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
12927 O_BomoMSG21635_complete:A_BomoMSG_c26958_g3_i4
656bp
 sorting_nexin-29_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
12928 O_BomoMSG21636_complete:A_BomoMSG_c26958_g3_i4
100bp
12929 O_BomoMSG21637_complete:A_BomoMSG_c26958_g3_i5
498bp
 sorting_nexin-29_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
12930 O_BomoMSG21638_complete:A_BomoMSG_c26959_g1_i3
315bp
 carbohydrate_sulfotransferase_11_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001537 F N-acetylgalactosamine 4-O-sulfotransferase activity
GO:0002063 P chondrocyte development
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0007585 P respiratory gaseous exchange by respiratory system
GO:0008146 F sulfotransferase activity
GO:0009791 P post-embryonic development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016051 P carbohydrate biosynthetic process
GO:0016740 F transferase activity
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030326 P embryonic limb morphogenesis
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0033037 P polysaccharide localization
GO:0036342 P post-anal tail morphogenesis
GO:0042127 P regulation of cell population proliferation
GO:0042733 P embryonic digit morphogenesis
GO:0043066 P negative regulation of apoptotic process
GO:0047756 F chondroitin 4-sulfotransferase activity
GO:0048589 P developmental growth
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050659 F N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
GO:0051216 P cartilage development
previous next from show/29137

- SilkBase 1999-2023 -