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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12871 O_BomoMSG21585_5prime_partial:A_BomoMSG_c26947_g1_i5
361bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_1-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
12872 O_BomoMSG21586_5prime_partial:A_BomoMSG_c26947_g1_i5
174bp
12873 O_BomoMSG21587_complete:A_BomoMSG_c26947_g1_i5
105bp
12874 O_BomoMSG21588_5prime_partial:A_BomoMSG_c26947_g1_i6
335bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_1-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
12875 O_BomoMSG21589_5prime_partial:A_BomoMSG_c26947_g1_i6
174bp
12876 O_BomoMSG2158_3prime_partial:A_BomoMSG_c10239_g1_i1
532bp
 heterogeneous_nuclear_ribonucleoprotein_Q_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
12877 O_BomoMSG21590_5prime_partial:A_BomoMSG_c26948_g1_i1
111bp
 ribosomal_protein_S6_kinase_alpha-4_isoform_X2_[Bombyx_mori]
12878 O_BomoMSG21591_5prime_partial:A_BomoMSG_c26948_g1_i2
495bp
 ribosomal_protein_S6_kinase_alpha-5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035175 F histone kinase activity (H3-S10 specific)
GO:0035556 P intracellular signal transduction
GO:0043987 P histone H3-S10 phosphorylation
GO:0043988 P histone H3-S28 phosphorylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
12879 O_BomoMSG21592_5prime_partial:A_BomoMSG_c26948_g1_i2
149bp
12880 O_BomoMSG21593_complete:A_BomoMSG_c26948_g1_i2
106bp
12881 O_BomoMSG21594_complete:A_BomoMSG_c26949_g1_i1
429bp
 N-acetylgalactosamine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
12882 O_BomoMSG21595_5prime_partial:A_BomoMSG_c26949_g1_i3
198bp
 N-acetylgalactosamine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
12883 O_BomoMSG21596_5prime_partial:A_BomoMSG_c26949_g1_i4
455bp
 N-acetylgalactosamine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
12884 O_BomoMSG21597_complete:A_BomoMSG_c26949_g1_i5
461bp
 N-acetylgalactosamine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
12885 O_BomoMSG21598_complete:A_BomoMSG_c26949_g1_i6
490bp
 N-acetylgalactosamine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004335 F galactokinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006012 P galactose metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0033858 F N-acetylgalactosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
12886 O_BomoMSG21599_3prime_partial:A_BomoMSG_c26950_g1_i1
391bp
 integrator_complex_subunit_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
12887 O_BomoMSG2159_5prime_partial:A_BomoMSG_c10239_g1_i1
159bp
12888 O_BomoMSG215_internal:A_BomoMSG_c1013_g1_i2
256bp
 probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005388 F P-type calcium transporter activity
GO:0005524 F ATP binding
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0046872 F metal ion binding
GO:0070588 P calcium ion transmembrane transport
GO:0098655 P cation transmembrane transport
12889 O_BomoMSG21600_3prime_partial:A_BomoMSG_c26950_g1_i2
549bp
 integrator_complex_subunit_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
12890 O_BomoMSG21601_complete:A_BomoMSG_c26951_g1_i2
254bp
 uncharacterized_protein_LOC110374764_[Helicoverpa_armigera]
12891 O_BomoMSG21602_complete:A_BomoMSG_c26951_g1_i2
122bp
 uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
12892 O_BomoMSG21603_5prime_partial:A_BomoMSG_c26951_g1_i5
119bp
 uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
12893 O_BomoMSG21604_internal:A_BomoMSG_c26952_g1_i1
159bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
12894 O_BomoMSG21605_5prime_partial:A_BomoMSG_c26952_g1_i2
609bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010941 P regulation of cell death
GO:0016568 P chromatin organization
GO:0035064 F methylated histone binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
12895 O_BomoMSG21606_complete:A_BomoMSG_c26952_g1_i2
119bp
12896 O_BomoMSG21607_internal:A_BomoMSG_c26952_g1_i3
880bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
12897 O_BomoMSG21608_complete:A_BomoMSG_c26952_g1_i3
119bp
12898 O_BomoMSG21609_5prime_partial:A_BomoMSG_c26953_g1_i1
181bp
 histone-lysine_N-methyltransferase_trithorax_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
12899 O_BomoMSG2160_3prime_partial:A_BomoMSG_c10239_g1_i2
532bp
 heterogeneous_nuclear_ribonucleoprotein_Q_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
12900 O_BomoMSG21610_complete:A_BomoMSG_c26953_g1_i1
156bp
 histone-lysine_N-methyltransferase_trithorax_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
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