SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12691 O_BomoMSG21422_complete:A_BomoMSG_c26911_g1_i2
472bp
 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003873 F 6-phosphofructo-2-kinase activity
GO:0004331 F fructose-2,6-bisphosphate 2-phosphatase activity
GO:0005524 F ATP binding
GO:0006000 P fructose metabolic process
GO:0006003 P fructose 2,6-bisphosphate metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016311 P dephosphorylation
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0046835 P carbohydrate phosphorylation
12692 O_BomoMSG21423_complete:A_BomoMSG_c26911_g1_i2
292bp
12693 O_BomoMSG21424_complete:A_BomoMSG_c26911_g1_i2
108bp
12694 O_BomoMSG21425_complete:A_BomoMSG_c26911_g1_i3
482bp
 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003873 F 6-phosphofructo-2-kinase activity
GO:0004331 F fructose-2,6-bisphosphate 2-phosphatase activity
GO:0005524 F ATP binding
GO:0006000 P fructose metabolic process
GO:0006003 P fructose 2,6-bisphosphate metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016311 P dephosphorylation
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0046835 P carbohydrate phosphorylation
12695 O_BomoMSG21426_complete:A_BomoMSG_c26911_g1_i3
302bp
12696 O_BomoMSG21427_complete:A_BomoMSG_c26911_g1_i3
108bp
12697 O_BomoMSG21428_5prime_partial:A_BomoMSG_c26912_g1_i1
500bp
 probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
12698 O_BomoMSG21429_complete:A_BomoMSG_c26912_g1_i1
158bp
12699 O_BomoMSG2142_complete:A_BomoMSG_c10183_g1_i1
789bp
 probable_aconitate_hydratase,_mitochondrial_[Bombyx_mori]
GO:0003994 F aconitate hydratase activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006099 P tricarboxylic acid cycle
GO:0006101 P citrate metabolic process
GO:0008152 P metabolic process
GO:0016829 F lyase activity
GO:0043209 C myelin sheath
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
12700 O_BomoMSG21430_5prime_partial:A_BomoMSG_c26912_g1_i2
977bp
 probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
12701 O_BomoMSG21431_complete:A_BomoMSG_c26912_g1_i2
158bp
12702 O_BomoMSG21432_5prime_partial:A_BomoMSG_c26912_g1_i3
866bp
 probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
12703 O_BomoMSG21433_complete:A_BomoMSG_c26912_g1_i3
158bp
12704 O_BomoMSG21434_complete:A_BomoMSG_c26913_g1_i3
123bp
 uncharacterized_protein_LOC101743439_[Bombyx_mori]
12705 O_BomoMSG21435_complete:A_BomoMSG_c26913_g3_i1
297bp
 glutathione_S-transferase_omega_2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004734 F pyrimidodiazepine synthase activity
GO:0005737 C cytoplasm
GO:0006726 P eye pigment biosynthetic process
GO:0006728 P pteridine biosynthetic process
GO:0006749 P glutathione metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016782 F transferase activity, transferring sulphur-containing groups
GO:0042803 F protein homodimerization activity
GO:0045174 F glutathione dehydrogenase (ascorbate) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
12706 O_BomoMSG21436_complete:A_BomoMSG_c26913_g4_i1
445bp
 guanine_deaminase_isoform_X1_[Bombyx_mori]
GO:0006147 P guanine catabolic process
GO:0008270 F zinc ion binding
GO:0008892 F guanine deaminase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
12707 O_BomoMSG21437_5prime_partial:A_BomoMSG_c26914_g1_i1
220bp
 calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X2_[Bombyx_mori]
GO:0002082 P regulation of oxidative phosphorylation
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043457 P regulation of cellular respiration
GO:0046872 F metal ion binding
GO:0051282 P regulation of sequestering of calcium ion
GO:0051503 P adenine nucleotide transport
GO:0055085 P transmembrane transport
GO:0071277 P cellular response to calcium ion
GO:0097274 P urea homeostasis
12708 O_BomoMSG21438_3prime_partial:A_BomoMSG_c26914_g2_i1
242bp
 calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
12709 O_BomoMSG21439_complete:A_BomoMSG_c26914_g1_i2
336bp
 calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X4_[Bombyx_mori]
GO:0002021 P response to dietary excess
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0014823 P response to activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032094 P response to food
GO:0035264 P multicellular organism growth
GO:0043010 P camera-type eye development
GO:0043231 C intracellular membrane-bounded organelle
GO:0045333 P cellular respiration
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
GO:0060612 P adipose tissue development
GO:0070062 C extracellular exosome
GO:0070588 P calcium ion transmembrane transport
12710 O_BomoMSG2143_complete:A_BomoMSG_c10183_g1_i1
123bp
 hypothetical_protein_AWJ20_1456_[Sugiyamaella_lignohabitans]
12711 O_BomoMSG21440_3prime_partial:A_BomoMSG_c26914_g2_i2
242bp
 calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
12712 O_BomoMSG21441_5prime_partial:A_BomoMSG_c26915_g1_i1
618bp
 DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
12713 O_BomoMSG21442_complete:A_BomoMSG_c26915_g1_i1
311bp
12714 O_BomoMSG21443_3prime_partial:A_BomoMSG_c26915_g1_i2
340bp
 DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
12715 O_BomoMSG21444_5prime_partial:A_BomoMSG_c26915_g1_i3
113bp
 DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0043596 C nuclear replication fork
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
GO:1903461 P Okazaki fragment processing involved in mitotic DNA replication
12716 O_BomoMSG21445_complete:A_BomoMSG_c26915_g1_i4
776bp
 DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
12717 O_BomoMSG21446_complete:A_BomoMSG_c26915_g1_i4
311bp
12718 O_BomoMSG21447_complete:A_BomoMSG_c26916_g2_i1
123bp
 PREDICTED:_uncharacterized_protein_LOC106127574_isoform_X10_[Papilio_xuthus]
GO:0001069 F regulatory region RNA binding
GO:0001701 P in utero embryonic development
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006397 P mRNA processing
GO:0007399 P nervous system development
GO:0008380 P RNA splicing
GO:0010494 C cytoplasmic stress granule
GO:0030326 P embryonic limb morphogenesis
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0045445 P myoblast differentiation
GO:0046872 F metal ion binding
12719 O_BomoMSG21448_complete:A_BomoMSG_c26917_g1_i2
404bp
 histone_acetyltransferase_type_B_catalytic_subunit_[Bombyx_mori]
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006323 P DNA packaging
GO:0006335 P DNA replication-dependent chromatin assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006348 P subtelomeric heterochromatin assembly
GO:0006475 P internal protein amino acid acetylation
GO:0007584 P response to nutrient
GO:0010485 F H4 histone acetyltransferase activity
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043967 P histone H4 acetylation
12720 O_BomoMSG21449_complete:A_BomoMSG_c26918_g1_i1
497bp
 U4/U6_small_nuclear_ribonucleoprotein_Prp31_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005687 C U4 snRNP
GO:0005690 C U4atac snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0060041 P retina development in camera-type eye
GO:0071011 C precatalytic spliceosome
GO:0071339 C MLL1 complex
GO:0097526 C spliceosomal tri-snRNP complex
previous next from show/29137

- SilkBase 1999-2023 -