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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12721 O_BomoMSG2144_complete:A_BomoMSG_c10184_g1_i1
248bp
 peroxiredoxin-4_precursor_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005790 C smooth endoplasmic reticulum
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0008584 P male gonad development
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0019471 P 4-hydroxyproline metabolic process
GO:0022417 P protein maturation by protein folding
GO:0030198 P extracellular matrix organization
GO:0042803 F protein homodimerization activity
GO:0045454 P cell redox homeostasis
GO:0051920 F peroxiredoxin activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0072593 P reactive oxygen species metabolic process
GO:0098869 P cellular oxidant detoxification
GO:2000255 P negative regulation of male germ cell proliferation
12722 O_BomoMSG21450_5prime_partial:A_BomoMSG_c26918_g1_i2
467bp
 U4/U6_small_nuclear_ribonucleoprotein_Prp31_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005687 C U4 snRNP
GO:0005690 C U4atac snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0060041 P retina development in camera-type eye
GO:0071011 C precatalytic spliceosome
GO:0071339 C MLL1 complex
GO:0097526 C spliceosomal tri-snRNP complex
12723 O_BomoMSG21451_3prime_partial:A_BomoMSG_c26919_g1_i2
532bp
 transcription_termination_factor_5,_mitochondrial_[Bombyx_mori]
12724 O_BomoMSG21452_complete:A_BomoMSG_c26920_g1_i2
444bp
 uncharacterized_protein_LOC101735710_isoform_X4_[Bombyx_mori]
12725 O_BomoMSG21453_complete:A_BomoMSG_c26920_g1_i3
424bp
 uncharacterized_protein_LOC101735710_isoform_X6_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0033391 C chromatoid body
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0043186 C P granule
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
GO:0071546 C pi-body
12726 O_BomoMSG21454_complete:A_BomoMSG_c26921_g1_i1
176bp
 vacuolar_protein-sorting-associated_protein_25_[Bombyx_mori]
GO:0000814 C ESCRT II complex
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0007293 P germarium-derived egg chamber formation
GO:0008105 P protein localization
GO:0008283 P cell population proliferation
GO:0008593 P regulation of Notch signaling pathway
GO:0010008 C endosome membrane
GO:0010669 P epithelial structure maintenance
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019233 P sensory perception of pain
GO:0030154 P cell differentiation
GO:0030713 P ovarian follicle cell stalk formation
GO:0032509 P endosome transport via multivesicular body sorting pathway
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043328 P protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0045450 P bicoid mRNA localization
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060429 P epithelium development
GO:0070086 P ubiquitin-dependent endocytosis
GO:0097352 P autophagosome maturation
12727 O_BomoMSG21455_complete:A_BomoMSG_c26921_g1_i3
405bp
 Vacuolar_protein-sorting-associated_protein_25_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035299 F inositol pentakisphosphate 2-kinase activity
GO:0043647 P inositol phosphate metabolic process
GO:0052746 P inositol phosphorylation
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
12728 O_BomoMSG21456_internal:A_BomoMSG_c26922_g1_i1
144bp
 E3_ubiquitin-protein_ligase_UHRF1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0010216 P maintenance of DNA methylation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0035064 F methylated histone binding
GO:0042393 F histone binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044729 F hemi-methylated DNA-binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
12729 O_BomoMSG21457_5prime_partial:A_BomoMSG_c26922_g1_i3
487bp
 E3_ubiquitin-protein_ligase_UHRF1_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0010216 P maintenance of DNA methylation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0035064 F methylated histone binding
GO:0042393 F histone binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044729 F hemi-methylated DNA-binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
12730 O_BomoMSG21458_internal:A_BomoMSG_c26923_g2_i1
210bp
 microtubule-associated_protein_futsch_[Bombyx_mori]
12731 O_BomoMSG21459_3prime_partial:A_BomoMSG_c26925_g1_i1
103bp
 histone-lysine_N-methyltransferase_setd3_isoform_X2_[Bombyx_mori]
12732 O_BomoMSG2145_internal:A_BomoMSG_c10192_g1_i1
133bp
 hypoxia_up-regulated_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005790 C smooth endoplasmic reticulum
GO:1903298 P negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway
12733 O_BomoMSG21460_5prime_partial:A_BomoMSG_c26925_g2_i2
392bp
 histone-lysine_N-methyltransferase_setd3_isoform_X1_[Bombyx_mori]
GO:0000790 C chromatin
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0010452 P histone H3-K36 methylation
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018022 P peptidyl-lysine methylation
GO:0018023 P peptidyl-lysine trimethylation
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018026 P peptidyl-lysine monomethylation
GO:0018027 P peptidyl-lysine dimethylation
GO:0032259 P methylation
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
12734 O_BomoMSG21461_5prime_partial:A_BomoMSG_c26926_g1_i1
413bp
 zinc_finger_protein_791_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
12735 O_BomoMSG21462_complete:A_BomoMSG_c26926_g1_i4
544bp
 zinc_finger_protein_791_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
12736 O_BomoMSG21463_3prime_partial:A_BomoMSG_c26927_g1_i1
399bp
 WD_repeat-containing_protein_48_homolog_isoform_X2_[Bombyx_mori]
12737 O_BomoMSG21464_internal:A_BomoMSG_c26927_g2_i1
164bp
 WD_repeat-containing_protein_48_homolog_isoform_X2_[Bombyx_mori]
12738 O_BomoMSG21465_internal:A_BomoMSG_c26928_g1_i1
369bp
 uncharacterized_protein_LOC101742101_[Bombyx_mori]
12739 O_BomoMSG21466_5prime_partial:A_BomoMSG_c26928_g1_i1
184bp
12740 O_BomoMSG21467_5prime_partial:A_BomoMSG_c26928_g1_i1
157bp
12741 O_BomoMSG21468_internal:A_BomoMSG_c26928_g1_i2
787bp
 uncharacterized_protein_LOC101742101_[Bombyx_mori]
12742 O_BomoMSG21469_5prime_partial:A_BomoMSG_c26928_g1_i2
184bp
12743 O_BomoMSG2146_3prime_partial:A_BomoMSG_c10192_g1_i2
356bp
 hypoxia_up-regulated_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
12744 O_BomoMSG21470_5prime_partial:A_BomoMSG_c26928_g1_i2
157bp
12745 O_BomoMSG21471_complete:A_BomoMSG_c26928_g1_i2
107bp
12746 O_BomoMSG21472_3prime_partial:A_BomoMSG_c26928_g1_i3
802bp
 uncharacterized_protein_LOC101742101_[Bombyx_mori]
12747 O_BomoMSG21473_5prime_partial:A_BomoMSG_c26928_g1_i3
184bp
12748 O_BomoMSG21474_5prime_partial:A_BomoMSG_c26928_g1_i3
157bp
12749 O_BomoMSG21475_complete:A_BomoMSG_c26928_g1_i3
107bp
12750 O_BomoMSG21476_3prime_partial:A_BomoMSG_c26928_g1_i4
802bp
 uncharacterized_protein_LOC101742101_[Bombyx_mori]
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