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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12361 O_BomoMSG21125_5prime_partial:A_BomoMSG_c26843_g5_i2
357bp
 protein_NYNRIN_isoform_X1_[Bombyx_mori]
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030308 P negative regulation of cell growth
GO:0042130 P negative regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
12362 O_BomoMSG21126_5prime_partial:A_BomoMSG_c26843_g5_i4
104bp
 protein_NYNRIN_isoform_X2_[Bombyx_mori]
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030308 P negative regulation of cell growth
GO:0042130 P negative regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
12363 O_BomoMSG21127_5prime_partial:A_BomoMSG_c26843_g5_i5
357bp
 protein_NYNRIN_isoform_X1_[Bombyx_mori]
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030308 P negative regulation of cell growth
GO:0042130 P negative regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
12364 O_BomoMSG21128_5prime_partial:A_BomoMSG_c26844_g1_i1
377bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0043231 C intracellular membrane-bounded organelle
12365 O_BomoMSG21129_complete:A_BomoMSG_c26844_g1_i3
386bp
 endoplasmic_reticulum-Golgi_intermediate_compartment_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0043231 C intracellular membrane-bounded organelle
12366 O_BomoMSG2112_complete:A_BomoMSG_c10106_g1_i1
263bp
 ribonuclease_Oy_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0033897 F ribonuclease T2 activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
12367 O_BomoMSG21130_3prime_partial:A_BomoMSG_c26845_g1_i1
264bp
 visual_system_homeobox_2_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007601 P visual perception
GO:0021501 P prechordal plate formation
GO:0030900 P forebrain development
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048318 P axial mesoderm development
GO:0048329 P negative regulation of axial mesodermal cell fate specification
GO:0048339 P paraxial mesoderm development
GO:0048348 P paraxial mesodermal cell fate specification
GO:0048666 P neuron development
GO:0050896 P response to stimulus
12368 O_BomoMSG21131_complete:A_BomoMSG_c26845_g1_i1
139bp
12369 O_BomoMSG21132_complete:A_BomoMSG_c26845_g1_i2
396bp
 visual_system_homeobox_2_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0043010 P camera-type eye development
GO:0043565 F sequence-specific DNA binding
GO:0045165 P cell fate commitment
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060040 P retinal bipolar neuron differentiation
GO:0060042 P retina morphogenesis in camera-type eye
12370 O_BomoMSG21133_complete:A_BomoMSG_c26845_g1_i2
139bp
12371 O_BomoMSG21134_complete:A_BomoMSG_c26845_g1_i3
389bp
 visual_system_homeobox_2_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0043010 P camera-type eye development
GO:0043565 F sequence-specific DNA binding
GO:0045165 P cell fate commitment
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060040 P retinal bipolar neuron differentiation
GO:0060042 P retina morphogenesis in camera-type eye
12372 O_BomoMSG21135_complete:A_BomoMSG_c26845_g1_i3
139bp
12373 O_BomoMSG21136_internal:A_BomoMSG_c26846_g1_i1
722bp
 polycomb_protein_Asx_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001709 P cell fate determination
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007469 P antennal development
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0035517 C PR-DUB complex
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0035800 F deubiquitinase activator activity
GO:0045498 P sex comb development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:2000152 P regulation of ubiquitin-specific protease activity
GO:2000158 P positive regulation of ubiquitin-specific protease activity
12374 O_BomoMSG21137_complete:A_BomoMSG_c26846_g1_i2
1028bp
 polycomb_protein_Asx_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001709 P cell fate determination
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007469 P antennal development
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0035517 C PR-DUB complex
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0035800 F deubiquitinase activator activity
GO:0045498 P sex comb development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:2000152 P regulation of ubiquitin-specific protease activity
GO:2000158 P positive regulation of ubiquitin-specific protease activity
12375 O_BomoMSG21138_internal:A_BomoMSG_c26846_g1_i3
506bp
 polycomb_protein_Asx_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001709 P cell fate determination
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007469 P antennal development
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0035517 C PR-DUB complex
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0035800 F deubiquitinase activator activity
GO:0045498 P sex comb development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:2000152 P regulation of ubiquitin-specific protease activity
GO:2000158 P positive regulation of ubiquitin-specific protease activity
12376 O_BomoMSG21139_5prime_partial:A_BomoMSG_c26847_g1_i1
392bp
 uncharacterized_protein_LOC101743953_isoform_X1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
12377 O_BomoMSG2113_5prime_partial:A_BomoMSG_c10114_g1_i1
553bp
 eukaryotic_initiation_factor_4B_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0001731 P formation of translation preinitiation complex
GO:0002181 P cytoplasmic translation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005844 C polysome
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0033592 F RNA strand annealing activity
GO:0034057 F RNA strand-exchange activity
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0097010 P eukaryotic translation initiation factor 4F complex assembly
12378 O_BomoMSG21140_complete:A_BomoMSG_c26847_g1_i1
112bp
12379 O_BomoMSG21141_complete:A_BomoMSG_c26847_g1_i1
101bp
12380 O_BomoMSG21142_5prime_partial:A_BomoMSG_c26847_g1_i2
450bp
 uncharacterized_protein_LOC101743953_isoform_X2_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
12381 O_BomoMSG21143_complete:A_BomoMSG_c26847_g1_i2
112bp
12382 O_BomoMSG21144_complete:A_BomoMSG_c26847_g1_i2
101bp
12383 O_BomoMSG21145_5prime_partial:A_BomoMSG_c26847_g1_i3
418bp
 uncharacterized_protein_LOC101743953_isoform_X1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
12384 O_BomoMSG21146_complete:A_BomoMSG_c26847_g1_i3
112bp
12385 O_BomoMSG21147_complete:A_BomoMSG_c26847_g1_i3
101bp
12386 O_BomoMSG21148_5prime_partial:A_BomoMSG_c26847_g1_i4
236bp
 uncharacterized_protein_LOC101743953_isoform_X2_[Bombyx_mori]
12387 O_BomoMSG21149_complete:A_BomoMSG_c26847_g1_i4
112bp
12388 O_BomoMSG2114_complete:A_BomoMSG_c10114_g1_i1
153bp
12389 O_BomoMSG21150_5prime_partial:A_BomoMSG_c26849_g1_i1
243bp
 adenylyl_cyclase-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0003779 F actin binding
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0016020 C membrane
GO:0030036 P actin cytoskeleton organization
12390 O_BomoMSG21151_complete:A_BomoMSG_c26849_g1_i1
119bp
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