SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12331 O_BomoMSG21099_3prime_partial:A_BomoMSG_c26836_g1_i7
223bp
 uncharacterized_protein_LOC101736981_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003858 F 3-hydroxybutyrate dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0099617 C matrix side of mitochondrial inner membrane
12332 O_BomoMSG2109_complete:A_BomoMSG_c10081_g1_i1
500bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
12333 O_BomoMSG210_complete:A_BomoMSG_c951_g1_i1
125bp
12334 O_BomoMSG21100_internal:A_BomoMSG_c26837_g1_i1
614bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
12335 O_BomoMSG21101_5prime_partial:A_BomoMSG_c26837_g1_i1
122bp
12336 O_BomoMSG21102_internal:A_BomoMSG_c26837_g1_i2
378bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0051015 F actin filament binding
12337 O_BomoMSG21103_5prime_partial:A_BomoMSG_c26837_g1_i2
192bp
12338 O_BomoMSG21104_5prime_partial:A_BomoMSG_c26837_g1_i2
122bp
12339 O_BomoMSG21105_internal:A_BomoMSG_c26837_g1_i3
352bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0051015 F actin filament binding
12340 O_BomoMSG21106_5prime_partial:A_BomoMSG_c26837_g1_i3
167bp
12341 O_BomoMSG21107_5prime_partial:A_BomoMSG_c26837_g1_i3
122bp
12342 O_BomoMSG21108_3prime_partial:A_BomoMSG_c26837_g1_i4
760bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
12343 O_BomoMSG21109_5prime_partial:A_BomoMSG_c26837_g1_i4
211bp
12344 O_BomoMSG2110_complete:A_BomoMSG_c10090_g1_i1
541bp
 T-complex_protein_1_subunit_gamma_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
12345 O_BomoMSG21110_complete:A_BomoMSG_c26837_g1_i4
175bp
12346 O_BomoMSG21111_complete:A_BomoMSG_c26837_g1_i4
145bp
12347 O_BomoMSG21112_3prime_partial:A_BomoMSG_c26838_g2_i1
580bp
 aspartate--tRNA_ligase,_mitochondrial_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004815 F aspartate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0016874 F ligase activity
GO:0042803 F protein homodimerization activity
GO:0043039 P tRNA aminoacylation
GO:0050560 F aspartate-tRNA(Asn) ligase activity
12348 O_BomoMSG21113_3prime_partial:A_BomoMSG_c26839_g1_i1
433bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
12349 O_BomoMSG21114_5prime_partial:A_BomoMSG_c26839_g1_i2
332bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
12350 O_BomoMSG21115_internal:A_BomoMSG_c26839_g2_i1
697bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12351 O_BomoMSG21116_internal:A_BomoMSG_c26839_g2_i2
848bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12352 O_BomoMSG21117_internal:A_BomoMSG_c26839_g2_i3
1109bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12353 O_BomoMSG21118_internal:A_BomoMSG_c26839_g2_i4
992bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12354 O_BomoMSG21119_internal:A_BomoMSG_c26839_g2_i5
454bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12355 O_BomoMSG2111_complete:A_BomoMSG_c10090_g1_i1
153bp
 uncharacterized_protein_LOC110498115,_partial_[Oncorhynchus_mykiss]
12356 O_BomoMSG21120_internal:A_BomoMSG_c26839_g2_i6
676bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0001515 F opioid peptide activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008286 P insulin receptor signaling pathway
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
12357 O_BomoMSG21121_5prime_partial:A_BomoMSG_c26840_g1_i1
1127bp
 sterile_alpha_and_TIR_motif-containing_protein_1_isoform_X3_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0030424 C axon
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045087 P innate immune response
GO:0048678 P response to axon injury
GO:1901214 P regulation of neuron death
12358 O_BomoMSG21122_complete:A_BomoMSG_c26840_g1_i2
1098bp
 sterile_alpha_and_TIR_motif-containing_protein_1_isoform_X4_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0030424 C axon
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045087 P innate immune response
GO:0048678 P response to axon injury
GO:1901214 P regulation of neuron death
12359 O_BomoMSG21123_5prime_partial:A_BomoMSG_c26841_g1_i1
112bp
12360 O_BomoMSG21124_complete:A_BomoMSG_c26842_g1_i1
238bp
 28S_ribosomal_protein_S7,_mitochondrial_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
previous next from show/29137

- SilkBase 1999-2023 -