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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1231 O_BomoMSG11108_complete:A_BomoMSG_c23115_g1_i1
101bp
1232 O_BomoMSG11109_internal:A_BomoMSG_c23115_g1_i2
382bp
 4-coumarate--CoA_ligase_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0008152 P metabolic process
GO:0008218 P bioluminescence
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0047077 F Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
GO:0055114 P obsolete oxidation-reduction process
1233 O_BomoMSG1110_internal:A_BomoMSG_c5230_g1_i1
201bp
1234 O_BomoMSG11110_complete:A_BomoMSG_c23115_g1_i2
101bp
1235 O_BomoMSG11111_3prime_partial:A_BomoMSG_c23116_g1_i2
120bp
 intraflagellar_transport_protein_20_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005930 C axoneme
GO:0030030 P cell projection organization
GO:0030992 C intraciliary transport particle B
GO:0034067 P protein localization to Golgi apparatus
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042384 P cilium assembly
GO:0051642 P centrosome localization
GO:0061512 P protein localization to cilium
1236 O_BomoMSG11112_5prime_partial:A_BomoMSG_c23117_g1_i1
938bp
 ATP-binding_cassette_sub-family_F_member_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
1237 O_BomoMSG11113_complete:A_BomoMSG_c23117_g1_i1
139bp
 Os09g0572450_[Oryza_sativa_Japonica_Group]
1238 O_BomoMSG11114_complete:A_BomoMSG_c23117_g1_i1
113bp
1239 O_BomoMSG11115_complete:A_BomoMSG_c23117_g2_i1
707bp
 ATP-binding_cassette_sub-family_F_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0051607 P defense response to virus
1240 O_BomoMSG11116_complete:A_BomoMSG_c23117_g2_i1
265bp
1241 O_BomoMSG11117_5prime_partial:A_BomoMSG_c23121_g1_i1
245bp
 KAT8_regulatory_NSL_complex_subunit_2_isoform_X1_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0005634 C nucleus
GO:0016568 P chromatin organization
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0044545 C NSL complex
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
1242 O_BomoMSG11118_complete:A_BomoMSG_c23123_g1_i1
267bp
 persulfide_dioxygenase_ETHE1,_mitochondrial_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006749 P glutathione metabolic process
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0050313 F sulfur dioxygenase activity
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070813 P hydrogen sulfide metabolic process
1243 O_BomoMSG11119_internal:A_BomoMSG_c23125_g1_i1
125bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X2_[Papilio_machaon]
1244 O_BomoMSG1111_internal:A_BomoMSG_c5230_g1_i1
200bp
 ALK_tyrosine_kinase_receptor_[Bombyx_mori]
1245 O_BomoMSG11120_complete:A_BomoMSG_c23127_g1_i1
364bp
 splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1246 O_BomoMSG11121_complete:A_BomoMSG_c23127_g1_i1
155bp
1247 O_BomoMSG11122_complete:A_BomoMSG_c23127_g1_i1
145bp
1248 O_BomoMSG11123_complete:A_BomoMSG_c23127_g1_i2
247bp
 splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1249 O_BomoMSG11124_complete:A_BomoMSG_c23127_g1_i2
172bp
 splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1250 O_BomoMSG11125_complete:A_BomoMSG_c23127_g1_i2
155bp
1251 O_BomoMSG11126_complete:A_BomoMSG_c23127_g1_i2
145bp
1252 O_BomoMSG11127_complete:A_BomoMSG_c23127_g1_i2
133bp
1253 O_BomoMSG11128_complete:A_BomoMSG_c23127_g1_i3
360bp
 splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1254 O_BomoMSG11129_complete:A_BomoMSG_c23127_g1_i3
155bp
1255 O_BomoMSG1112_internal:A_BomoMSG_c5233_g1_i1
156bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005882 C intermediate filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007010 P cytoskeleton organization
GO:0007050 P regulation of cell cycle
GO:0007155 P cell adhesion
GO:0007409 P axonogenesis
GO:0008090 P retrograde axonal transport
GO:0008092 F cytoskeletal protein binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0014704 C intercalated disc
GO:0015629 C actin cytoskeleton
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030424 C axon
GO:0031673 C H zone
GO:0035371 C microtubule plus-end
GO:0042383 C sarcolemma
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045104 P intermediate filament cytoskeleton organization
GO:0046872 F metal ion binding
GO:0046907 P intracellular transport
GO:0048471 C perinuclear region of cytoplasm
GO:0051010 F microtubule plus-end binding
GO:0097038 C perinuclear endoplasmic reticulum
GO:0097481 C postsynaptic density
GO:1904115 C axon cytoplasm
1256 O_BomoMSG11130_complete:A_BomoMSG_c23127_g1_i3
145bp
1257 O_BomoMSG11131_complete:A_BomoMSG_c23127_g1_i3
136bp
 splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1258 O_BomoMSG11132_complete:A_BomoMSG_c23127_g1_i3
104bp
1259 O_BomoMSG11133_complete:A_BomoMSG_c23127_g1_i4
366bp
 splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1260 O_BomoMSG11134_complete:A_BomoMSG_c23127_g1_i4
155bp
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