Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1201	O_BomoMSG11081_3prime_partial:A_BomoMSG_c23097_g1_i1 112bp	Bomo_Chr5	phosphatidylinositol_glycan_anchor_biosynthesis_class_U_protein_[Bombyx_mori]	GO:0003923 F GPI-anchor transamidase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005886 C plasma membrane GO:0006506 P GPI anchor biosynthetic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016255 P attachment of GPI anchor to protein GO:0034235 F GPI anchor binding GO:0042765 C GPI-anchor transamidase complex GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
1202	O_BomoMSG11082_internal:A_BomoMSG_c23098_g1_i1 126bp	Bomo_Chr4	zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]	GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0003676 F nucleic acid binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
1203	O_BomoMSG11083_internal:A_BomoMSG_c23098_g2_i1 177bp	Bomo_Chr4	zinc_finger_protein_Xfin_isoform_X2_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
1204	O_BomoMSG11084_internal:A_BomoMSG_c23098_g2_i2 450bp	Bomo_Chr4	zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
1205	O_BomoMSG11085_5prime_partial:A_BomoMSG_c23099_g1_i1 116bp	Bomo_Chr26	DNA_topoisomerase_2-like_[Bombyx_mori]
1206	O_BomoMSG11086_complete:A_BomoMSG_c23099_g1_i2 247bp	Bomo_Chr26	DNA_topoisomerase_2-like_[Bombyx_mori]
1207	O_BomoMSG11087_complete:A_BomoMSG_c23100_g1_i1 580bp	Bomo_Chr4	eIF_2a_kinase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0017148 P negative regulation of translation
1208	O_BomoMSG11088_internal:A_BomoMSG_c23103_g1_i1 184bp	Bomo_Chr25	WD_repeat-containing_protein_92_[Bombyx_mori]	GO:0006915 P apoptotic process GO:0043130 F ubiquitin binding
1209	O_BomoMSG11089_3prime_partial:A_BomoMSG_c23103_g1_i2 266bp	Bomo_Chr25	WD_repeat-containing_protein_92_[Bombyx_mori]	GO:0006915 P apoptotic process GO:0043130 F ubiquitin binding
1210	O_BomoMSG1108_internal:A_BomoMSG_c5215_g1_i1 113bp	Bomo_Chr22	bifunctional_heparan_sulfate_N-deacetylase/N-sulfotransferase_[Bombyx_mori]	GO:0000137 C Golgi cis cisterna GO:0000139 C Golgi membrane GO:0003824 F catalytic activity GO:0005622 C intracellular anatomical structure GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0006024 P glycosaminoglycan biosynthetic process GO:0006790 P sulfur compound metabolic process GO:0007166 P cell surface receptor signaling pathway GO:0007283 P spermatogenesis GO:0007367 P segment polarity determination GO:0007427 P epithelial cell migration, open tracheal system GO:0007428 P primary branching, open tracheal system GO:0007474 P imaginal disc-derived wing vein specification GO:0007507 P heart development GO:0007509 P mesoderm migration involved in gastrulation GO:0008146 F sulfotransferase activity GO:0008152 P metabolic process GO:0008543 P fibroblast growth factor receptor signaling pathway GO:0008587 P imaginal disc-derived wing margin morphogenesis GO:0015012 P heparan sulfate proteoglycan biosynthetic process GO:0015014 P heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process GO:0015016 F [heparan sulfate]-glucosamine N-sulfotransferase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016055 P Wnt signaling pathway GO:0016740 F transferase activity GO:0016787 F hydrolase activity GO:0030210 P heparin biosynthetic process GO:0045570 P regulation of imaginal disc growth GO:0048312 P intracellular distribution of mitochondria GO:0048488 P synaptic vesicle endocytosis GO:0060828 P regulation of canonical Wnt signaling pathway GO:0090097 P regulation of BMP signaling pathway
1211	O_BomoMSG11090_complete:A_BomoMSG_c23103_g1_i2 157bp	Bomo_Chr25
1212	O_BomoMSG11091_3prime_partial:A_BomoMSG_c23104_g1_i1 229bp	Bomo_Chr15	histone-lysine_N-methyltransferase_SETMAR_[Bombyx_mori]	GO:0000014 F single-stranded DNA endodeoxyribonuclease activity GO:0000729 P DNA double-strand break processing GO:0000737 P DNA catabolic process, endonucleolytic GO:0000793 C condensed chromosome GO:0003690 F double-stranded DNA binding GO:0003697 F single-stranded DNA binding GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0006303 P double-strand break repair via nonhomologous end joining GO:0008168 F methyltransferase activity GO:0008270 F zinc ion binding GO:0008283 P cell population proliferation GO:0010452 P histone H3-K36 methylation GO:0015074 P DNA integration GO:0016568 P chromatin organization GO:0016740 F transferase activity GO:0018024 F histone-lysine N-methyltransferase activity GO:0031297 P replication fork processing GO:0032259 P methylation GO:0034968 P histone lysine methylation GO:0035861 C site of double-strand break GO:0042800 F histone methyltransferase activity (H3-K4 specific) GO:0042803 F protein homodimerization activity GO:0043566 F DNA binding GO:0044547 F DNA topoisomerase binding GO:0044774 P mitotic DNA integrity checkpoint signaling GO:0046872 F metal ion binding GO:0046975 F histone methyltransferase activity (H3-K36 specific) GO:0051568 P histone H3-K4 methylation GO:0071157 P regulation of cell cycle GO:0090305 P nucleic acid phosphodiester bond hydrolysis GO:0097676 P histone H3-K36 dimethylation GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining GO:2001251 P negative regulation of chromosome organization
1213	O_BomoMSG11092_internal:A_BomoMSG_c23106_g1_i1 270bp	Bomo_Chr11	serine/threonine-protein_kinase_SMG1_[Bombyx_mori]
1214	O_BomoMSG11093_internal:A_BomoMSG_c23107_g1_i1 162bp	Bomo_Chr2	synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]	GO:0001669 C acrosomal vesicle GO:0005215 F transporter activity GO:0005515 F protein binding GO:0005886 C plasma membrane GO:0006810 P transport GO:0006836 P neurotransmitter transport GO:0008021 C synaptic vesicle GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0030054 C cell junction GO:0030672 C synaptic vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0045202 C synapse GO:0055085 P transmembrane transport
1215	O_BomoMSG11094_complete:A_BomoMSG_c23107_g1_i1 111bp	Bomo_Chr2
1216	O_BomoMSG11095_internal:A_BomoMSG_c23107_g1_i2 186bp	Bomo_Chr2	synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]	GO:0001669 C acrosomal vesicle GO:0005215 F transporter activity GO:0005515 F protein binding GO:0005886 C plasma membrane GO:0006810 P transport GO:0006836 P neurotransmitter transport GO:0008021 C synaptic vesicle GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0030054 C cell junction GO:0030672 C synaptic vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0045202 C synapse GO:0055085 P transmembrane transport
1217	O_BomoMSG11096_complete:A_BomoMSG_c23107_g1_i2 111bp	Bomo_Chr2
1218	O_BomoMSG11097_3prime_partial:A_BomoMSG_c23107_g1_i3 219bp	Bomo_Chr2	synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]	GO:0004872 F signaling receptor activity GO:0005215 F transporter activity GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005911 C cell-cell junction GO:0006810 P transport GO:0006836 P neurotransmitter transport GO:0006874 P cellular calcium ion homeostasis GO:0007268 P chemical synaptic transmission GO:0008021 C synaptic vesicle GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0019901 F protein kinase binding GO:0022857 F transmembrane transporter activity GO:0030054 C cell junction GO:0030672 C synaptic vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0031594 C neuromuscular junction GO:0043005 C neuron projection GO:0043195 C terminal bouton GO:0045202 C synapse GO:0048786 C presynaptic active zone GO:0055085 P transmembrane transport
1219	O_BomoMSG11098_complete:A_BomoMSG_c23107_g1_i3 111bp	Bomo_Chr2
1220	O_BomoMSG11099_complete:A_BomoMSG_c23108_g1_i1 468bp	Bomo_Chr6	RING_finger_and_transmembrane_domain-containing_protein_2_[Bombyx_mori]	GO:0008270 F zinc ion binding GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0046872 F metal ion binding
1221	O_BomoMSG1109_5prime_partial:A_BomoMSG_c5215_g1_i1 106bp	Bomo_Chr22
1222	O_BomoMSG110_complete:A_BomoMSG_c399_g1_i1 179bp	Bomo_Chr19	39S_ribosomal_protein_L13,_mitochondrial_[Bombyx_mori]	GO:0003729 F mRNA binding GO:0003735 F structural constituent of ribosome GO:0005739 C mitochondrion GO:0005762 C mitochondrial large ribosomal subunit GO:0005840 C ribosome GO:0006412 P translation GO:0019233 P sensory perception of pain GO:0030529 C ribonucleoprotein complex
1223	O_BomoMSG11100_complete:A_BomoMSG_c23109_g1_i1 187bp	Bomo_Chr10	ubiquitin-conjugating_enzyme_E2-24_kDa_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005524 F ATP binding GO:0005575 C cellular_component GO:0016567 P protein ubiquitination GO:0016740 F transferase activity GO:0019915 P lipid storage
1224	O_BomoMSG11101_complete:A_BomoMSG_c23109_g1_i2 154bp	Bomo_Chr10	PREDICTED:_ubiquitin-conjugating_enzyme_E2_E1-like_isoform_X1_[Aedes_albopictus]	GO:0000166 F nucleotide binding GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005524 F ATP binding GO:0005575 C cellular_component GO:0016567 P protein ubiquitination GO:0016740 F transferase activity GO:0019915 P lipid storage
1225	O_BomoMSG11102_complete:A_BomoMSG_c23109_g1_i3 187bp	Bomo_Chr10	ubiquitin-conjugating_enzyme_E2-24_kDa_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005524 F ATP binding GO:0005575 C cellular_component GO:0016567 P protein ubiquitination GO:0016740 F transferase activity GO:0019915 P lipid storage
1226	O_BomoMSG11103_3prime_partial:A_BomoMSG_c23110_g1_i1 122bp	Bomo_Chr20	long-chain_fatty_acid_transport_protein_1_isoform_X1_[Bombyx_mori]
1227	O_BomoMSG11104_internal:A_BomoMSG_c23112_g1_i1 339bp	Bomo_Chr4	WD_repeat-containing_protein_59_isoform_X1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process GO:0032008 P positive regulation of TOR signaling GO:0034198 P cellular response to amino acid starvation GO:0061700 C GATOR2 complex
1228	O_BomoMSG11105_internal:A_BomoMSG_c23113_g1_i1 303bp	Bomo_Chr1	phytanoyl-CoA_dioxygenase_domain-containing_protein_1_[Bombyx_mori]	GO:0016491 F oxidoreductase activity GO:0046872 F metal ion binding GO:0051213 F dioxygenase activity GO:0055114 P obsolete oxidation-reduction process
1229	O_BomoMSG11106_internal:A_BomoMSG_c23113_g1_i2 199bp	Bomo_Chr1	phytanoyl-CoA_dioxygenase_domain-containing_protein_1_[Bombyx_mori]	GO:0005575 C cellular_component GO:0016491 F oxidoreductase activity GO:0046872 F metal ion binding GO:0051213 F dioxygenase activity GO:0055114 P obsolete oxidation-reduction process
1230	O_BomoMSG11107_internal:A_BomoMSG_c23115_g1_i1 266bp	Bomo_Chr16	luciferin_4-monooxygenase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003824 F catalytic activity GO:0004497 F monooxygenase activity GO:0005524 F ATP binding GO:0005777 C peroxisome GO:0008152 P metabolic process GO:0008218 P bioluminescence GO:0016491 F oxidoreductase activity GO:0046872 F metal ion binding GO:0047077 F Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity GO:0055114 P obsolete oxidation-reduction process