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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1261 O_BomoMSG11135_complete:A_BomoMSG_c23127_g1_i4
145bp
1262 O_BomoMSG11136_complete:A_BomoMSG_c23127_g1_i4
142bp
 splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1263 O_BomoMSG11137_complete:A_BomoMSG_c23127_g1_i4
104bp
1264 O_BomoMSG11138_complete:A_BomoMSG_c23127_g1_i5
236bp
 splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1265 O_BomoMSG11139_complete:A_BomoMSG_c23127_g1_i5
171bp
 splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
1266 O_BomoMSG1113_3prime_partial:A_BomoMSG_c5234_g1_i1
124bp
 Coronin-7_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006895 P Golgi to endosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030041 P actin filament polymerization
GO:0031410 C cytoplasmic vesicle
1267 O_BomoMSG11140_complete:A_BomoMSG_c23127_g1_i5
155bp
1268 O_BomoMSG11141_complete:A_BomoMSG_c23127_g1_i5
145bp
1269 O_BomoMSG11142_complete:A_BomoMSG_c23127_g1_i5
136bp
 splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1270 O_BomoMSG11143_complete:A_BomoMSG_c23127_g1_i6
370bp
 splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1271 O_BomoMSG11144_complete:A_BomoMSG_c23127_g1_i6
155bp
1272 O_BomoMSG11145_complete:A_BomoMSG_c23127_g1_i6
145bp
1273 O_BomoMSG11146_complete:A_BomoMSG_c23127_g1_i7
101bp
 splicing_factor_arginine/serine-rich_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1274 O_BomoMSG11147_complete:A_BomoMSG_c23127_g1_i8
247bp
 splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1275 O_BomoMSG11148_complete:A_BomoMSG_c23127_g1_i8
166bp
 splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1276 O_BomoMSG11149_complete:A_BomoMSG_c23127_g1_i8
155bp
1277 O_BomoMSG1114_internal:A_BomoMSG_c5239_g1_i1
138bp
cuticular_protein_RR-2_motif_90_precursor_[Bombyx_mori]
1278 O_BomoMSG11150_complete:A_BomoMSG_c23127_g1_i8
145bp
1279 O_BomoMSG11151_complete:A_BomoMSG_c23127_g1_i8
133bp
1280 O_BomoMSG11152_internal:A_BomoMSG_c23128_g1_i1
286bp
 CLIP-associating_protein_isoform_X7_[Helicoverpa_armigera]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000922 C spindle pole
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0019827 P stem cell population maintenance
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0030723 P ovarian fusome organization
GO:0031116 P positive regulation of microtubule polymerization
GO:0032154 C cleavage furrow
GO:0035099 P hemocyte migration
GO:0035371 C microtubule plus-end
GO:0040001 P establishment of mitotic spindle localization
GO:0042995 C cell projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046602 P regulation of mitotic centrosome separation
GO:0048477 P oogenesis
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
GO:0090307 P mitotic spindle assembly
1281 O_BomoMSG11153_5prime_partial:A_BomoMSG_c23128_g1_i1
112bp
1282 O_BomoMSG11154_5prime_partial:A_BomoMSG_c23128_g1_i1
107bp
1283 O_BomoMSG11155_internal:A_BomoMSG_c23129_g1_i2
213bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
GO:0004864 F protein phosphatase inhibitor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006336 P DNA replication-independent chromatin assembly
GO:0014823 P response to activity
GO:0016568 P chromatin organization
GO:0019904 F protein domain specific binding
GO:0030346 F protein phosphatase 2B binding
GO:0031491 F nucleosome binding
GO:0043086 P negative regulation of catalytic activity
GO:0060548 P negative regulation of cell death
1284 O_BomoMSG11156_complete:A_BomoMSG_c23129_g1_i2
101bp
1285 O_BomoMSG11157_internal:A_BomoMSG_c23129_g1_i3
111bp
 calcineurin-binding_protein_cabin-1_[Bombyx_mori]
GO:0004864 F protein phosphatase inhibitor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006336 P DNA replication-independent chromatin assembly
GO:0014823 P response to activity
GO:0016568 P chromatin organization
GO:0019904 F protein domain specific binding
GO:0030346 F protein phosphatase 2B binding
GO:0031491 F nucleosome binding
GO:0043086 P negative regulation of catalytic activity
GO:0060548 P negative regulation of cell death
1286 O_BomoMSG11158_complete:A_BomoMSG_c23129_g1_i3
101bp
1287 O_BomoMSG11159_complete:A_BomoMSG_c23130_g1_i1
101bp
 small_integral_membrane_protein_14_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1288 O_BomoMSG1115_internal:A_BomoMSG_c5240_g1_i1
125bp
 uncharacterized_protein_LOC101738826,_partial_[Bombyx_mori]
1289 O_BomoMSG11160_complete:A_BomoMSG_c23131_g1_i1
215bp
 pleckstrin_homology_domain-containing_family_A_member_3_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0008289 F lipid binding
GO:0016020 C membrane
1290 O_BomoMSG11161_3prime_partial:A_BomoMSG_c23133_g1_i1
684bp
 U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]
GO:0001650 C fibrillar center
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0034455 C t-UTP complex
GO:0044822 F RNA binding
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