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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12211 O_BomoMSG20991_internal:A_BomoMSG_c26811_g1_i1
817bp
 uncharacterized_protein_LOC105842244_[Bombyx_mori]
12212 O_BomoMSG20992_internal:A_BomoMSG_c26811_g1_i2
1063bp
 uncharacterized_protein_LOC105842244_[Bombyx_mori]
12213 O_BomoMSG20993_3prime_partial:A_BomoMSG_c26811_g1_i3
1115bp
 uncharacterized_protein_LOC105842244_[Bombyx_mori]
12214 O_BomoMSG20994_5prime_partial:A_BomoMSG_c26812_g1_i1
301bp
 nuclear_export_mediator_factor_NEMF_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006611 P protein export from nucleus
12215 O_BomoMSG20995_complete:A_BomoMSG_c26812_g1_i1
125bp
12216 O_BomoMSG20996_complete:A_BomoMSG_c26812_g1_i3
974bp
 nuclear_export_mediator_factor_NEMF_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006611 P protein export from nucleus
12217 O_BomoMSG20997_complete:A_BomoMSG_c26812_g1_i3
127bp
12218 O_BomoMSG20998_complete:A_BomoMSG_c26812_g1_i3
125bp
12219 O_BomoMSG20999_complete:A_BomoMSG_c26812_g1_i3
115bp
12220 O_BomoMSG2099_internal:A_BomoMSG_c10050_g1_i1
116bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016787 F hydrolase activity
GO:0097362 C MCM8-MCM9 complex
12221 O_BomoMSG209_complete:A_BomoMSG_c951_g1_i1
189bp
 conserved_exported_protein_of_unknown_function_[Magnetospirillum_sp._XM-1]
12222 O_BomoMSG20_internal:A_BomoMSG_c128_g1_i1
143bp
 membrane-bound_transcription_factor_site-1_protease,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004175 F endopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
GO:0036500 P ATF6-mediated unfolded protein response
GO:0042990 P obsolete regulation of transcription factor import into nucleus
12223 O_BomoMSG21000_complete:A_BomoMSG_c26812_g2_i1
117bp
12224 O_BomoMSG21001_complete:A_BomoMSG_c26813_g1_i1
100bp
12225 O_BomoMSG21002_complete:A_BomoMSG_c26814_g1_i2
246bp
 DID_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
12226 O_BomoMSG21003_5prime_partial:A_BomoMSG_c26814_g1_i3
256bp
 DID_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
12227 O_BomoMSG21004_complete:A_BomoMSG_c26814_g1_i4
246bp
 DID_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
12228 O_BomoMSG21005_complete:A_BomoMSG_c26814_g1_i5
246bp
 DID_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
12229 O_BomoMSG21006_5prime_partial:A_BomoMSG_c26815_g5_i2
130bp
 tyrosine-protein_phosphatase_non-receptor_type_9_isoform_X2_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
12230 O_BomoMSG21007_5prime_partial:A_BomoMSG_c26815_g5_i2
123bp
12231 O_BomoMSG21008_3prime_partial:A_BomoMSG_c26815_g5_i2
99bp
12232 O_BomoMSG21009_complete:A_BomoMSG_c26816_g1_i1
567bp
 leupaxin_isoform_X4_[Bombyx_mori]
GO:0000187 P obsolete activation of MAPK activity
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007010 P cytoskeleton organization
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0008013 F beta-catenin binding
GO:0008270 F zinc ion binding
GO:0008360 P regulation of cell shape
GO:0017166 F vinculin binding
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030054 C cell junction
GO:0030159 F signaling receptor complex adaptor activity
GO:0031252 C cell leading edge
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0045860 P positive regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0048041 P focal adhesion assembly
GO:0048754 P branching morphogenesis of an epithelial tube
GO:0051435 F BH4 domain binding
GO:0060396 P growth hormone receptor signaling pathway
12233 O_BomoMSG2100_5prime_partial:A_BomoMSG_c10055_g1_i1
106bp
12234 O_BomoMSG21010_complete:A_BomoMSG_c26816_g1_i1
118bp
12235 O_BomoMSG21011_5prime_partial:A_BomoMSG_c26816_g1_i2
417bp
 paxillin_isoform_X2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
12236 O_BomoMSG21012_complete:A_BomoMSG_c26816_g1_i2
118bp
12237 O_BomoMSG21013_5prime_partial:A_BomoMSG_c26816_g1_i3
320bp
 paxillin_isoform_X2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
12238 O_BomoMSG21014_internal:A_BomoMSG_c26817_g1_i1
588bp
 5'-3'_exoribonuclease_1_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
12239 O_BomoMSG21015_complete:A_BomoMSG_c26817_g1_i1
101bp
12240 O_BomoMSG21016_3prime_partial:A_BomoMSG_c26817_g1_i2
1113bp
 5'-3'_exoribonuclease_1_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
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