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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12241 O_BomoMSG21017_complete:A_BomoMSG_c26817_g1_i2
101bp
12242 O_BomoMSG21018_complete:A_BomoMSG_c26818_g2_i2
434bp
 cleavage_stimulation_factor_subunit_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0044822 F RNA binding
12243 O_BomoMSG21019_complete:A_BomoMSG_c26818_g2_i2
188bp
12244 O_BomoMSG2101_complete:A_BomoMSG_c10055_g1_i1
100bp
 protein_takeout_[Bombyx_mori]
12245 O_BomoMSG21020_complete:A_BomoMSG_c26818_g2_i2
137bp
12246 O_BomoMSG21021_5prime_partial:A_BomoMSG_c26819_g1_i1
102bp
 uncharacterized_protein_LOC101737875_isoform_X3_[Bombyx_mori]
12247 O_BomoMSG21022_complete:A_BomoMSG_c26819_g1_i2
244bp
 uncharacterized_protein_LOC101737875_isoform_X1_[Bombyx_mori]
12248 O_BomoMSG21023_5prime_partial:A_BomoMSG_c26819_g1_i3
213bp
 uncharacterized_protein_LOC101737875_isoform_X3_[Bombyx_mori]
12249 O_BomoMSG21024_complete:A_BomoMSG_c26820_g1_i1
299bp
 congested-like_trachea_protein_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003735 F structural constituent of ribosome
GO:0005215 F transporter activity
GO:0005476 F carnitine:acyl carnitine antiporter activity
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0006844 P acyl carnitine transport
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0015879 P carnitine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035002 P liquid clearance, open tracheal system
12250 O_BomoMSG21025_complete:A_BomoMSG_c26820_g1_i1
143bp
 AAEL001388-PA_[Aedes_aegypti]
12251 O_BomoMSG21026_complete:A_BomoMSG_c26820_g1_i1
110bp
 Carboxypeptidase_N_subunit_[Ooceraea_biroi]
12252 O_BomoMSG21027_5prime_partial:A_BomoMSG_c26820_g1_i2
143bp
 congested-like_trachea_protein_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12253 O_BomoMSG21028_complete:A_BomoMSG_c26820_g1_i2
143bp
 AAEL001388-PA_[Aedes_aegypti]
12254 O_BomoMSG21029_5prime_partial:A_BomoMSG_c26821_g1_i1
127bp
 methionine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004825 F methionine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006431 P methionyl-tRNA aminoacylation
GO:0016874 F ligase activity
12255 O_BomoMSG2102_complete:A_BomoMSG_c10062_g1_i1
237bp
 exosome_complex_exonuclease_Rrp40_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0045190 P isotype switching
GO:0045830 P positive regulation of isotype switching
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
12256 O_BomoMSG21030_5prime_partial:A_BomoMSG_c26821_g1_i1
107bp
12257 O_BomoMSG21031_5prime_partial:A_BomoMSG_c26821_g1_i2
568bp
 methionine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004825 F methionine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006431 P methionyl-tRNA aminoacylation
GO:0016874 F ligase activity
12258 O_BomoMSG21032_5prime_partial:A_BomoMSG_c26821_g1_i2
107bp
12259 O_BomoMSG21033_complete:A_BomoMSG_c26822_g1_i2
181bp
 ras-related_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003713 F transcription coactivator activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030336 P negative regulation of cell migration
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032486 P Rap protein signal transduction
GO:0044291 C cell-cell contact zone
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061097 P regulation of protein tyrosine kinase activity
GO:0070062 C extracellular exosome
GO:0090557 P establishment of endothelial intestinal barrier
GO:1903506 P regulation of nucleic acid-templated transcription
12260 O_BomoMSG21034_5prime_partial:A_BomoMSG_c26822_g1_i3
112bp
 ras-related_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003713 F transcription coactivator activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030336 P negative regulation of cell migration
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032486 P Rap protein signal transduction
GO:0044291 C cell-cell contact zone
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061097 P regulation of protein tyrosine kinase activity
GO:0070062 C extracellular exosome
GO:0090557 P establishment of endothelial intestinal barrier
GO:1903506 P regulation of nucleic acid-templated transcription
12261 O_BomoMSG21035_5prime_partial:A_BomoMSG_c26823_g3_i1
296bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12262 O_BomoMSG21036_complete:A_BomoMSG_c26823_g3_i1
157bp
 PREDICTED:_uncharacterized_protein_LOC106131445_[Amyelois_transitella]
12263 O_BomoMSG21037_3prime_partial:A_BomoMSG_c26823_g3_i1
113bp
 uncharacterized_protein_LOC109862627,_partial_[Pseudomyrmex_gracilis]
12264 O_BomoMSG21038_internal:A_BomoMSG_c26823_g3_i2
179bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
12265 O_BomoMSG21039_5prime_partial:A_BomoMSG_c26823_g3_i2
175bp
 PREDICTED:_uncharacterized_protein_LOC106131445_[Amyelois_transitella]
12266 O_BomoMSG2103_complete:A_BomoMSG_c10062_g1_i1
163bp
12267 O_BomoMSG21040_3prime_partial:A_BomoMSG_c26823_g3_i2
113bp
 uncharacterized_protein_LOC109862627,_partial_[Pseudomyrmex_gracilis]
12268 O_BomoMSG21041_internal:A_BomoMSG_c26823_g3_i3
171bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
12269 O_BomoMSG21042_5prime_partial:A_BomoMSG_c26823_g3_i3
167bp
 PREDICTED:_uncharacterized_protein_LOC106131445_[Amyelois_transitella]
12270 O_BomoMSG21043_3prime_partial:A_BomoMSG_c26823_g3_i3
113bp
 uncharacterized_protein_LOC109862627,_partial_[Pseudomyrmex_gracilis]
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