Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
12151	O_BomoMSG20937_complete:A_BomoMSG_c26799_g3_i2 398bp	Bomo_Chr17	polyadenylate-binding_protein-interacting_protein_1_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005575 C cellular_component GO:0005737 C cytoplasm GO:0006417 P regulation of translation GO:0008494 F translation activator activity GO:0045727 P positive regulation of translation
12152	O_BomoMSG20938_complete:A_BomoMSG_c26799_g3_i3 398bp	Bomo_Chr17	polyadenylate-binding_protein-interacting_protein_1_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005575 C cellular_component GO:0005737 C cytoplasm GO:0006417 P regulation of translation GO:0008494 F translation activator activity GO:0045727 P positive regulation of translation
12153	O_BomoMSG20939_3prime_partial:A_BomoMSG_c26800_g2_i1 762bp	Bomo_Chr10	DNA_polymerase_eta_isoform_X1_[Bombyx_mori]	GO:0000731 P DNA synthesis involved in DNA repair GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006282 P regulation of DNA repair GO:0006290 P pyrimidine dimer repair GO:0006301 P postreplication repair GO:0006974 P cellular response to DNA damage stimulus GO:0010225 P response to UV-C GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0046872 F metal ion binding GO:0070987 P error-free translesion synthesis GO:0071494 P cellular response to UV-C GO:0071897 P DNA biosynthetic process
12154	O_BomoMSG2093_complete:A_BomoMSG_c10037_g1_i1 240bp	Bomo_Chr19	transcription_factor_jun-D_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000165 P MAPK cascade GO:0000790 C chromatin GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001736 P establishment of planar polarity GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0003713 F transcription coactivator activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005667 C transcription regulator complex GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006909 P phagocytosis GO:0007254 P JNK cascade GO:0007391 P dorsal closure GO:0007464 P R3/R4 cell fate commitment GO:0007465 P R7 cell fate commitment GO:0008134 F transcription factor binding GO:0008348 P negative regulation of antimicrobial humoral response GO:0009314 P response to radiation GO:0009612 P response to mechanical stimulus GO:0010259 P multicellular organism aging GO:0010941 P regulation of cell death GO:0032496 P response to lipopolysaccharide GO:0032870 P cellular response to hormone stimulus GO:0034097 P response to cytokine GO:0042060 P wound healing GO:0042127 P regulation of cell population proliferation GO:0042493 P response to xenobiotic stimulus GO:0043565 F sequence-specific DNA binding GO:0045597 P positive regulation of cell differentiation GO:0045823 P positive regulation of heart contraction GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046529 P imaginal disc fusion, thorax closure GO:0046843 P dorsal appendage formation GO:0046844 P chorion micropyle formation GO:0046982 F protein heterodimerization activity GO:0051124 P synaptic assembly at neuromuscular junction GO:0051591 P response to cAMP GO:0051726 P regulation of cell cycle
12155	O_BomoMSG20940_3prime_partial:A_BomoMSG_c26800_g2_i2 701bp	Bomo_Chr10	DNA_polymerase_eta_isoform_X2_[Bombyx_mori]	GO:0000731 P DNA synthesis involved in DNA repair GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006282 P regulation of DNA repair GO:0006290 P pyrimidine dimer repair GO:0006301 P postreplication repair GO:0006974 P cellular response to DNA damage stimulus GO:0010225 P response to UV-C GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0046872 F metal ion binding GO:0070987 P error-free translesion synthesis GO:0071494 P cellular response to UV-C GO:0071897 P DNA biosynthetic process
12156	O_BomoMSG20941_3prime_partial:A_BomoMSG_c26800_g2_i4 701bp	Bomo_Chr10	DNA_polymerase_eta_isoform_X2_[Bombyx_mori]	GO:0000731 P DNA synthesis involved in DNA repair GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006282 P regulation of DNA repair GO:0006290 P pyrimidine dimer repair GO:0006301 P postreplication repair GO:0006974 P cellular response to DNA damage stimulus GO:0010225 P response to UV-C GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0046872 F metal ion binding GO:0070987 P error-free translesion synthesis GO:0071494 P cellular response to UV-C GO:0071897 P DNA biosynthetic process
12157	O_BomoMSG20942_complete:A_BomoMSG_c26801_g1_i1 690bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X4_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005215 F transporter activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005765 C lysosomal membrane GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0017137 F small GTPase binding GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019894 F kinesin binding GO:0030117 C membrane coat GO:0030119 C AP-type membrane coat adaptor complex GO:0030131 C clathrin adaptor complex GO:0030136 C clathrin-coated vesicle GO:0030659 C cytoplasmic vesicle membrane GO:0030665 C clathrin-coated vesicle membrane GO:0030669 C clathrin-coated endocytic vesicle membrane GO:0030742 F GTP-dependent protein binding GO:0031410 C cytoplasmic vesicle GO:0032438 P melanosome organization GO:0032588 C trans-Golgi network membrane GO:0035646 P endosome to melanosome transport GO:0043231 C intracellular membrane-bounded organelle GO:0043323 P positive regulation of natural killer cell degranulation GO:0045954 P positive regulation of natural killer cell mediated cytotoxicity GO:0050690 P regulation of defense response to virus by virus GO:0055037 C recycling endosome GO:0090160 P Golgi to lysosome transport
12158	O_BomoMSG20943_complete:A_BomoMSG_c26801_g1_i1 134bp	Bomo_Chr10
12159	O_BomoMSG20944_complete:A_BomoMSG_c26801_g1_i1 120bp	Bomo_Chr10	hypothetical_protein_AX774_g6656,_partial_[Zancudomyces_culisetae]
12160	O_BomoMSG20945_5prime_partial:A_BomoMSG_c26801_g1_i1 119bp	Bomo_Chr10
12161	O_BomoMSG20946_3prime_partial:A_BomoMSG_c26801_g1_i1 105bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X5_[Bombyx_mori]
12162	O_BomoMSG20947_complete:A_BomoMSG_c26801_g1_i2 455bp	Bomo_Chr10	adaptor_protein_complex-1_gamma_subunit_[Bombyx_mori]	GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005794 C Golgi apparatus GO:0005802 C trans-Golgi network GO:0005829 C cytosol GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0017137 F small GTPase binding GO:0019894 F kinesin binding GO:0030117 C membrane coat GO:0030131 C clathrin adaptor complex GO:0030136 C clathrin-coated vesicle GO:0030665 C clathrin-coated vesicle membrane GO:0030742 F GTP-dependent protein binding GO:0031410 C cytoplasmic vesicle GO:0035646 P endosome to melanosome transport GO:0043231 C intracellular membrane-bounded organelle GO:0043323 P positive regulation of natural killer cell degranulation GO:0045954 P positive regulation of natural killer cell mediated cytotoxicity GO:0048471 C perinuclear region of cytoplasm GO:0055037 C recycling endosome GO:0090160 P Golgi to lysosome transport
12163	O_BomoMSG20948_5prime_partial:A_BomoMSG_c26801_g1_i2 119bp	Bomo_Chr10
12164	O_BomoMSG20949_complete:A_BomoMSG_c26801_g1_i2 114bp	Bomo_Chr10	hypothetical_protein_AX774_g6656,_partial_[Zancudomyces_culisetae]
12165	O_BomoMSG2094_complete:A_BomoMSG_c10038_g1_i1 552bp	Bomo_Chr23	asparagine_synthetase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity GO:0005524 F ATP binding GO:0006529 P asparagine biosynthetic process GO:0006541 P glutamine metabolic process GO:0008652 P cellular amino acid biosynthetic process GO:0016874 F ligase activity GO:0070981 P L-asparagine biosynthetic process
12166	O_BomoMSG20950_3prime_partial:A_BomoMSG_c26801_g1_i2 105bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X5_[Bombyx_mori]
12167	O_BomoMSG20951_5prime_partial:A_BomoMSG_c26801_g1_i3 119bp	Bomo_Chr10
12168	O_BomoMSG20952_3prime_partial:A_BomoMSG_c26801_g1_i3 105bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X5_[Bombyx_mori]
12169	O_BomoMSG20953_complete:A_BomoMSG_c26801_g1_i4 684bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X5_[Bombyx_mori]	GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005794 C Golgi apparatus GO:0005802 C trans-Golgi network GO:0005829 C cytosol GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0017137 F small GTPase binding GO:0019894 F kinesin binding GO:0030117 C membrane coat GO:0030131 C clathrin adaptor complex GO:0030136 C clathrin-coated vesicle GO:0030665 C clathrin-coated vesicle membrane GO:0030742 F GTP-dependent protein binding GO:0031410 C cytoplasmic vesicle GO:0035646 P endosome to melanosome transport GO:0043231 C intracellular membrane-bounded organelle GO:0043323 P positive regulation of natural killer cell degranulation GO:0045954 P positive regulation of natural killer cell mediated cytotoxicity GO:0048471 C perinuclear region of cytoplasm GO:0055037 C recycling endosome GO:0090160 P Golgi to lysosome transport
12170	O_BomoMSG20954_complete:A_BomoMSG_c26801_g1_i4 134bp	Bomo_Chr10
12171	O_BomoMSG20955_5prime_partial:A_BomoMSG_c26801_g1_i4 119bp	Bomo_Chr10
12172	O_BomoMSG20956_complete:A_BomoMSG_c26801_g1_i4 114bp	Bomo_Chr10	hypothetical_protein_AX774_g6656,_partial_[Zancudomyces_culisetae]
12173	O_BomoMSG20957_3prime_partial:A_BomoMSG_c26801_g1_i4 105bp	Bomo_Chr10	AP-1_complex_subunit_gamma-1_isoform_X5_[Bombyx_mori]
12174	O_BomoMSG20958_complete:A_BomoMSG_c26802_g1_i1 842bp	Bomo_Chr12	muscle_glycogen_phosphorylase_[Bombyx_mori]	GO:0004645 F 1,4-alpha-oligoglucan phosphorylase activity GO:0005737 C cytoplasm GO:0005975 P carbohydrate metabolic process GO:0005977 P glycogen metabolic process GO:0005980 P glycogen catabolic process GO:0008184 F glycogen phosphorylase activity GO:0008340 P determination of adult lifespan GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0030170 F pyridoxal phosphate binding GO:0042803 F protein homodimerization activity GO:0043234 C protein-containing complex GO:0045819 P positive regulation of glycogen catabolic process GO:0045824 P negative regulation of innate immune response GO:0050829 P defense response to Gram-negative bacterium GO:0060361 P flight
12175	O_BomoMSG20959_complete:A_BomoMSG_c26802_g1_i1 166bp	Bomo_Chr12	hypothetical_protein_FF38_08040_[Lucilia_cuprina]
12176	O_BomoMSG2095_internal:A_BomoMSG_c10041_g1_i1 122bp	Bomo_Chr25	LOW_QUALITY_PROTEIN:_papilin_[Bombyx_mori]	GO:0004222 F metalloendopeptidase activity GO:0004867 F serine-type endopeptidase inhibitor activity GO:0005201 F extracellular matrix structural constituent GO:0005576 C extracellular region GO:0005578 C extracellular matrix GO:0005604 C basement membrane GO:0006508 P proteolysis GO:0007275 P multicellular organism development GO:0008233 F peptidase activity GO:0008237 F metallopeptidase activity GO:0008270 F zinc ion binding GO:0010466 P negative regulation of peptidase activity GO:0010951 P negative regulation of endopeptidase activity GO:0030198 P extracellular matrix organization GO:0030414 F peptidase inhibitor activity GO:0031012 C extracellular matrix
12177	O_BomoMSG20960_complete:A_BomoMSG_c26802_g1_i1 146bp	Bomo_Chr12	Uncharacterised_protein_[Klebsiella_pneumoniae]
12178	O_BomoMSG20961_complete:A_BomoMSG_c26802_g1_i1 112bp	Bomo_Chr12	Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
12179	O_BomoMSG20962_3prime_partial:A_BomoMSG_c26802_g1_i2 152bp	Bomo_Chr12	hypothetical_protein_FF38_08040_[Lucilia_cuprina]
12180	O_BomoMSG20963_5prime_partial:A_BomoMSG_c26802_g1_i2 142bp	Bomo_Chr12	muscle_glycogen_phosphorylase_[Bombyx_mori]	GO:0004645 F 1,4-alpha-oligoglucan phosphorylase activity GO:0005737 C cytoplasm GO:0005975 P carbohydrate metabolic process GO:0005977 P glycogen metabolic process GO:0005980 P glycogen catabolic process GO:0008184 F glycogen phosphorylase activity GO:0008340 P determination of adult lifespan GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0030170 F pyridoxal phosphate binding GO:0042803 F protein homodimerization activity GO:0043234 C protein-containing complex GO:0045819 P positive regulation of glycogen catabolic process GO:0045824 P negative regulation of innate immune response GO:0050829 P defense response to Gram-negative bacterium GO:0060361 P flight