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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12121 O_BomoMSG2090_5prime_partial:A_BomoMSG_c10033_g1_i1
337bp
 ribosomal_RNA_processing_protein_1_homolog_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005634 C nucleus
GO:0006364 P rRNA processing
GO:0016072 P rRNA metabolic process
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
12122 O_BomoMSG20910_complete:A_BomoMSG_c26793_g1_i2
194bp
 nuclear_envelope_integral_membrane_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12123 O_BomoMSG20911_complete:A_BomoMSG_c26793_g1_i3
159bp
 nuclear_envelope_integral_membrane_protein_1_[Bombyx_mori]
12124 O_BomoMSG20912_5prime_partial:A_BomoMSG_c26793_g2_i1
272bp
 nuclear_envelope_integral_membrane_protein_1_[Bombyx_mori]
GO:0001654 P eye development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043621 F protein self-association
12125 O_BomoMSG20913_complete:A_BomoMSG_c26793_g2_i1
166bp
12126 O_BomoMSG20914_5prime_partial:A_BomoMSG_c26793_g1_i4
128bp
 nuclear_envelope_integral_membrane_protein_1_[Bombyx_mori]
12127 O_BomoMSG20915_5prime_partial:A_BomoMSG_c26793_g2_i2
207bp
12128 O_BomoMSG20916_3prime_partial:A_BomoMSG_c26793_g2_i2
108bp
12129 O_BomoMSG20917_5prime_partial:A_BomoMSG_c26793_g2_i3
198bp
12130 O_BomoMSG20918_3prime_partial:A_BomoMSG_c26793_g2_i3
99bp
12131 O_BomoMSG20919_complete:A_BomoMSG_c26794_g1_i1
353bp
 uncharacterized_protein_LOC101742436_isoform_X2_[Bombyx_mori]
12132 O_BomoMSG2091_3prime_partial:A_BomoMSG_c10033_g1_i1
174bp
12133 O_BomoMSG20920_complete:A_BomoMSG_c26794_g1_i1
256bp
12134 O_BomoMSG20921_complete:A_BomoMSG_c26794_g1_i2
305bp
 uncharacterized_protein_LOC101742436_isoform_X2_[Bombyx_mori]
12135 O_BomoMSG20922_complete:A_BomoMSG_c26794_g1_i2
256bp
12136 O_BomoMSG20923_complete:A_BomoMSG_c26794_g1_i3
305bp
 uncharacterized_protein_LOC101742436_isoform_X2_[Bombyx_mori]
12137 O_BomoMSG20924_complete:A_BomoMSG_c26794_g1_i3
256bp
12138 O_BomoMSG20925_5prime_partial:A_BomoMSG_c26794_g1_i4
116bp
 uncharacterized_protein_LOC101742436_isoform_X3_[Bombyx_mori]
12139 O_BomoMSG20926_internal:A_BomoMSG_c26794_g1_i5
144bp
 uncharacterized_protein_LOC101742436_isoform_X1_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
12140 O_BomoMSG20927_5prime_partial:A_BomoMSG_c26794_g1_i5
139bp
12141 O_BomoMSG20928_complete:A_BomoMSG_c26795_g1_i1
100bp
12142 O_BomoMSG20929_5prime_partial:A_BomoMSG_c26795_g1_i2
359bp
 G1/S-specific_cyclin-D3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0051301 P cell division
12143 O_BomoMSG2092_complete:A_BomoMSG_c10035_g1_i1
297bp
 alpha-tocopherol_transfer_protein_[Bombyx_mori]
GO:0001890 P placenta development
GO:0001892 P embryonic placenta development
GO:0005215 F transporter activity
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007584 P response to nutrient
GO:0008289 F lipid binding
GO:0008431 F vitamin E binding
GO:0009268 P response to pH
GO:0009636 P response to toxic substance
GO:0019842 F vitamin binding
GO:0032502 P developmental process
GO:0042360 P vitamin E metabolic process
GO:0043325 F phosphatidylinositol-3,4-bisphosphate binding
GO:0046909 P obsolete intermembrane transport
GO:0051180 P vitamin transport
GO:0051452 P intracellular pH reduction
GO:0060548 P negative regulation of cell death
GO:0090212 P negative regulation of establishment of blood-brain barrier
12144 O_BomoMSG20930_5prime_partial:A_BomoMSG_c26795_g1_i2
104bp
12145 O_BomoMSG20931_5prime_partial:A_BomoMSG_c26796_g1_i2
260bp
 polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
12146 O_BomoMSG20932_complete:A_BomoMSG_c26796_g1_i3
164bp
 polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
12147 O_BomoMSG20933_5prime_partial:A_BomoMSG_c26797_g1_i1
206bp
 glycosyltransferase_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008378 F galactosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
12148 O_BomoMSG20934_complete:A_BomoMSG_c26797_g1_i2
342bp
 glycosyltransferase_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008378 F galactosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
12149 O_BomoMSG20935_5prime_partial:A_BomoMSG_c26798_g1_i1
102bp
 uncharacterized_protein_LOC101736860_isoform_X2_[Bombyx_mori]
12150 O_BomoMSG20936_complete:A_BomoMSG_c26798_g1_i2
253bp
 uncharacterized_protein_LOC101736860_isoform_X1_[Bombyx_mori]
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