SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12091 O_BomoMSG20883_5prime_partial:A_BomoMSG_c26787_g1_i3
209bp
 double-stranded_RNA-binding_protein_Staufen_homolog_2_isoform_X2_[Bombyx_mori]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006403 P RNA localization
GO:0007017 P microtubule-based process
GO:0007275 P multicellular organism development
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0007400 P neuroblast fate determination
GO:0007616 P long-term memory
GO:0008017 F microtubule binding
GO:0008104 P protein localization
GO:0008298 P intracellular mRNA localization
GO:0008595 P anterior/posterior axis specification, embryo
GO:0009925 C basal plasma membrane
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016324 C apical plasma membrane
GO:0019094 P pole plasm mRNA localization
GO:0035418 P protein localization to synapse
GO:0045167 P asymmetric protein localization involved in cell fate determination
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045180 C basal cortex
GO:0045450 P bicoid mRNA localization
GO:0045451 P pole plasm oskar mRNA localization
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0048477 P oogenesis
GO:0055059 P asymmetric neuroblast division
GO:0060293 C germ plasm
GO:0071212 C subsynaptic reticulum
12092 O_BomoMSG20884_complete:A_BomoMSG_c26787_g1_i3
107bp
12093 O_BomoMSG20885_3prime_partial:A_BomoMSG_c26788_g1_i1
142bp
 atypical_kinase_COQ8B,_mitochondrial_isoform_X1_[Bombyx_mori]
12094 O_BomoMSG20886_5prime_partial:A_BomoMSG_c26788_g2_i1
504bp
 atypical_kinase_COQ8B,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004674 F protein serine/threonine kinase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0032836 P glomerular basement membrane development
GO:0072015 P glomerular visceral epithelial cell development
12095 O_BomoMSG20887_complete:A_BomoMSG_c26788_g2_i2
266bp
 atypical_kinase_COQ8B,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0004674 F protein serine/threonine kinase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0032836 P glomerular basement membrane development
GO:0072015 P glomerular visceral epithelial cell development
12096 O_BomoMSG20888_internal:A_BomoMSG_c26789_g1_i1
347bp
 ubiquitin_conjugation_factor_E4_B_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
12097 O_BomoMSG20889_5prime_partial:A_BomoMSG_c26789_g1_i1
115bp
12098 O_BomoMSG2088_complete:A_BomoMSG_c10030_g1_i1
127bp
12099 O_BomoMSG20890_3prime_partial:A_BomoMSG_c26789_g1_i1
112bp
12100 O_BomoMSG20891_complete:A_BomoMSG_c26789_g1_i1
105bp
12101 O_BomoMSG20892_internal:A_BomoMSG_c26789_g1_i2
678bp
 ubiquitin_conjugation_factor_E4_B_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
12102 O_BomoMSG20893_complete:A_BomoMSG_c26789_g1_i2
153bp
12103 O_BomoMSG20894_complete:A_BomoMSG_c26789_g1_i2
105bp
12104 O_BomoMSG20895_3prime_partial:A_BomoMSG_c26789_g1_i4
813bp
 ubiquitin_conjugation_factor_E4_B_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0008626 P granzyme-mediated apoptotic signaling pathway
GO:0009411 P response to UV
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0031175 P neuron projection development
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044257 P cellular protein catabolic process
GO:0051082 F unfolded protein binding
GO:0051117 F ATPase binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
12105 O_BomoMSG20896_complete:A_BomoMSG_c26789_g1_i4
153bp
12106 O_BomoMSG20897_complete:A_BomoMSG_c26789_g1_i4
105bp
12107 O_BomoMSG20898_5prime_partial:A_BomoMSG_c26790_g1_i2
122bp
 glycolipid_transfer_protein_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0017089 F glycolipid transfer activity
GO:0046836 P glycolipid transport
GO:0051861 F glycolipid binding
12108 O_BomoMSG20899_complete:A_BomoMSG_c26791_g1_i1
946bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
12109 O_BomoMSG2089_complete:A_BomoMSG_c10030_g1_i1
126bp
12110 O_BomoMSG208_complete:A_BomoMSG_c951_g1_i1
573bp
 60_kDa_heat_shock_protein,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0006458 P 'de novo' protein folding
GO:0006626 P protein targeting to mitochondrion
GO:0007005 P mitochondrion organization
GO:0009408 P response to heat
GO:0034605 P cellular response to heat
GO:0042026 P protein refolding
GO:0051082 F unfolded protein binding
12111 O_BomoMSG20900_5prime_partial:A_BomoMSG_c26791_g1_i1
162bp
12112 O_BomoMSG20901_complete:A_BomoMSG_c26791_g1_i1
106bp
12113 O_BomoMSG20902_5prime_partial:A_BomoMSG_c26791_g1_i2
517bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0001754 P eye photoreceptor cell differentiation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006470 P protein dephosphorylation
GO:0007525 P somatic muscle development
GO:0008601 F protein phosphatase regulator activity
GO:0030674 F protein-macromolecule adaptor activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0045732 P positive regulation of protein catabolic process
GO:0046872 F metal ion binding
GO:0061053 P somite development
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090249 P regulation of cell migration involved in somitogenic axis elongation
GO:0090263 P positive regulation of canonical Wnt signaling pathway
12114 O_BomoMSG20903_5prime_partial:A_BomoMSG_c26791_g1_i2
162bp
12115 O_BomoMSG20904_5prime_partial:A_BomoMSG_c26791_g1_i4
426bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0001754 P eye photoreceptor cell differentiation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006470 P protein dephosphorylation
GO:0007525 P somatic muscle development
GO:0008601 F protein phosphatase regulator activity
GO:0030674 F protein-macromolecule adaptor activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0045732 P positive regulation of protein catabolic process
GO:0046872 F metal ion binding
GO:0061053 P somite development
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090249 P regulation of cell migration involved in somitogenic axis elongation
GO:0090263 P positive regulation of canonical Wnt signaling pathway
12116 O_BomoMSG20905_5prime_partial:A_BomoMSG_c26791_g1_i4
162bp
12117 O_BomoMSG20906_5prime_partial:A_BomoMSG_c26791_g1_i5
672bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta_isoform_X1_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
12118 O_BomoMSG20907_5prime_partial:A_BomoMSG_c26791_g1_i5
162bp
12119 O_BomoMSG20908_complete:A_BomoMSG_c26792_g1_i2
343bp
 nucleoporin-like_protein_amo1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
12120 O_BomoMSG20909_complete:A_BomoMSG_c26793_g1_i1
159bp
 nuclear_envelope_integral_membrane_protein_1_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -