SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1171 O_BomoMSG11054_complete:A_BomoMSG_c23074_g1_i3
104bp
1172 O_BomoMSG11055_complete:A_BomoMSG_c23075_g1_i1
118bp
 GSK3-beta_interaction_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
1173 O_BomoMSG11056_complete:A_BomoMSG_c23079_g1_i1
506bp
 putative_sugar_transporter_protein_5_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1174 O_BomoMSG11057_complete:A_BomoMSG_c23079_g1_i1
187bp
1175 O_BomoMSG11058_complete:A_BomoMSG_c23080_g1_i1
190bp
 DCMP_deaminase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004132 F dCMP deaminase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009165 P nucleotide biosynthetic process
GO:0016787 F hydrolase activity
GO:0046134 P pyrimidine nucleoside biosynthetic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
1176 O_BomoMSG11059_5prime_partial:A_BomoMSG_c23081_g1_i1
182bp
 calpain-A_isoform_X2_[Bombyx_mori]
GO:0004198 F calcium-dependent cysteine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006909 P phagocytosis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008340 P determination of adult lifespan
GO:0009953 P dorsal/ventral pattern formation
GO:0015629 C actin cytoskeleton
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0021919 P BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030036 P actin cytoskeleton organization
GO:0042335 P cuticle development
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0050832 P defense response to fungus
1177 O_BomoMSG1105_internal:A_BomoMSG_c5208_g1_i1
176bp
 uncharacterized_protein_LOC101746896_isoform_X3_[Bombyx_mori]
1178 O_BomoMSG11060_3prime_partial:A_BomoMSG_c23082_g1_i1
338bp
 protein_inturned_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008589 P regulation of smoothened signaling pathway
GO:0009986 C cell surface
GO:0030030 P cell projection organization
GO:0042384 P cilium assembly
GO:0060173 P limb development
1179 O_BomoMSG11061_internal:A_BomoMSG_c23082_g2_i1
350bp
 protein_inturned_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008589 P regulation of smoothened signaling pathway
GO:0009986 C cell surface
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0021513 P spinal cord dorsal/ventral patterning
GO:0021915 P neural tube development
GO:0030030 P cell projection organization
GO:0030216 P keratinocyte differentiation
GO:0030278 P regulation of ossification
GO:0031069 P hair follicle morphogenesis
GO:0042384 P cilium assembly
GO:0042733 P embryonic digit morphogenesis
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0051782 P negative regulation of cell division
GO:0060173 P limb development
GO:0060271 P cilium assembly
GO:1903887 P motile cilium assembly
1180 O_BomoMSG11062_5prime_partial:A_BomoMSG_c23082_g2_i2
475bp
 protein_inturned_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008589 P regulation of smoothened signaling pathway
GO:0009986 C cell surface
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0021513 P spinal cord dorsal/ventral patterning
GO:0021915 P neural tube development
GO:0030030 P cell projection organization
GO:0030216 P keratinocyte differentiation
GO:0030278 P regulation of ossification
GO:0031069 P hair follicle morphogenesis
GO:0042384 P cilium assembly
GO:0042733 P embryonic digit morphogenesis
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0051782 P negative regulation of cell division
GO:0060173 P limb development
GO:0060271 P cilium assembly
GO:1903887 P motile cilium assembly
1181 O_BomoMSG11063_internal:A_BomoMSG_c23082_g2_i3
106bp
 protein_inturned_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008589 P regulation of smoothened signaling pathway
GO:0009986 C cell surface
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0021513 P spinal cord dorsal/ventral patterning
GO:0021915 P neural tube development
GO:0030030 P cell projection organization
GO:0030216 P keratinocyte differentiation
GO:0030278 P regulation of ossification
GO:0031069 P hair follicle morphogenesis
GO:0042384 P cilium assembly
GO:0042733 P embryonic digit morphogenesis
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0051782 P negative regulation of cell division
GO:0060173 P limb development
GO:0060271 P cilium assembly
GO:1903887 P motile cilium assembly
1182 O_BomoMSG11064_internal:A_BomoMSG_c23082_g2_i4
489bp
 protein_inturned_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008589 P regulation of smoothened signaling pathway
GO:0009986 C cell surface
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0021513 P spinal cord dorsal/ventral patterning
GO:0021915 P neural tube development
GO:0030030 P cell projection organization
GO:0030216 P keratinocyte differentiation
GO:0030278 P regulation of ossification
GO:0031069 P hair follicle morphogenesis
GO:0042384 P cilium assembly
GO:0042733 P embryonic digit morphogenesis
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0051782 P negative regulation of cell division
GO:0060173 P limb development
GO:0060271 P cilium assembly
GO:1903887 P motile cilium assembly
1183 O_BomoMSG11065_3prime_partial:A_BomoMSG_c23085_g1_i1
348bp
 poly(U)-specific_endoribonuclease_homolog_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1184 O_BomoMSG11066_complete:A_BomoMSG_c23087_g1_i1
110bp
1185 O_BomoMSG11067_5prime_partial:A_BomoMSG_c23088_g1_i1
188bp
 unc-112-related_protein_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0048738 P cardiac muscle tissue development
GO:0050829 P defense response to Gram-negative bacterium
GO:0050839 F cell adhesion molecule binding
1186 O_BomoMSG11068_5prime_partial:A_BomoMSG_c23088_g1_i1
102bp
1187 O_BomoMSG11069_5prime_partial:A_BomoMSG_c23089_g1_i1
333bp
 SPARC_precursor_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0046872 F metal ion binding
1188 O_BomoMSG1106_3prime_partial:A_BomoMSG_c5210_g1_i1
113bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0046983 F protein dimerization activity
1189 O_BomoMSG11070_3prime_partial:A_BomoMSG_c23089_g1_i1
136bp
1190 O_BomoMSG11071_5prime_partial:A_BomoMSG_c23092_g1_i1
102bp
 hypothetical_protein_RR46_03802_[Papilio_xuthus]
1191 O_BomoMSG11072_5prime_partial:A_BomoMSG_c23093_g1_i1
103bp
 uncharacterized_protein_LOC101737721_[Bombyx_mori]
1192 O_BomoMSG11073_complete:A_BomoMSG_c23094_g1_i1
117bp
1193 O_BomoMSG11074_complete:A_BomoMSG_c23094_g1_i1
103bp
 putative_nuclease_HARBI1,_partial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1194 O_BomoMSG11075_5prime_partial:A_BomoMSG_c23094_g1_i2
103bp
 putative_nuclease_HARBI1,_partial_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1195 O_BomoMSG11076_complete:A_BomoMSG_c23094_g1_i3
108bp
 PREDICTED:_putative_nuclease_HARBI1_[Plutella_xylostella]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1196 O_BomoMSG11077_5prime_partial:A_BomoMSG_c23094_g1_i3
103bp
 putative_nuclease_HARBI1,_partial_[Bombyx_mori]
1197 O_BomoMSG11078_complete:A_BomoMSG_c23095_g1_i1
136bp
 PREDICTED:_uncharacterized_protein_LOC106710515_[Papilio_machaon]
1198 O_BomoMSG11079_5prime_partial:A_BomoMSG_c23096_g1_i1
168bp
 double-strand-break_repair_protein_rad21_homolog_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0051301 P cell division
GO:0071168 P protein localization to chromatin
1199 O_BomoMSG1107_5prime_partial:A_BomoMSG_c5210_g1_i1
107bp
1200 O_BomoMSG11080_5prime_partial:A_BomoMSG_c23096_g1_i2
126bp
 double-strand-break_repair_protein_rad21_homolog_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0051301 P cell division
GO:0071168 P protein localization to chromatin
previous next from show/29137

- SilkBase 1999-2023 -